The generic function
extractMed re-constructs a list of vectors of medium concentrations from a simulation step in an
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An object of class Eval.
A number giving the simulation step of interest.
A character vector giving the names of substances, which should be added to the environment (the default takes all possible substances).
Medium concentrations in slot
medlist of an object of class
Eval store only the changes of concentrations in the simulation process. The function
extractMed reconstructs the original and uncompressed version of medium concentrations.
Returns a list containing concentration vectors of all medium substances.
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data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model bac <- Bac(Ec_core,deathrate=0.05, minweight=0.05,growtype="exponential") #initialize a bacterium arena <- Arena(n=20,m=20) #initialize the environment arena <- addOrg(arena,bac,amount=10) #add 10 organisms arena <- addSubs(arena,40) #add all possible substances eval <- simEnv(arena,5) med5 <- extractMed(eval,5)
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