TibetanMoth: Tibetan Moth

In BarcodingR: Species Identification using DNA Barcodes

Description

COI DNA barcodes of Tibetan Moth in China.

Usage

data("TibetanMoth")

Format

The format is: 'DNAbin' raw [1:319, 1:630] a t a a ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:319] "LS0909030M,Noctuidae_Himalaea_unica" "LZ0827026M,Noctuidae_Amphipyra_pyramidea" "ML0829010M,Noctuidae_Auchmis_saga" "BM0830055M,Noctuidae_Auchmis_saga" ... ..$ : NULL

Details

COI DNA barcodes of Tibetan Moth (Noctuidae) in China.

Source

http://dx.plos.org/10.1371/journal.pone.0064428.

References

Q. Jin, H.L. Han, X.M. Hu, X.H. Li,C.D. Zhu,S. Y. W. Ho, R. D. Ward, A.B. Zhang* . (2013).Quantifying Species Diversity with a DNA Barcoding-Based Method: Tibetan Moth Species (Noctuidae) on the Qinghai-Tibetan Plateau. PloS One 8: e644.

Examples

data(TibetanMoth)
TibetanMoth

Example output

Loading required package: ape
Loading required package: nnet
Loading required package: class
Loading required package: sp
319 DNA sequences in binary format stored in a matrix.

All sequences of same length: 630 

Labels:
LS0909030M,Noctuidae_Himalaea_unica
LZ0827026M,Noctuidae_Amphipyra_pyramidea
ML0829010M,Noctuidae_Auchmis_saga
BM0830055M,Noctuidae_Auchmis_saga
BM0830073M,Noctuidae_Amyna_punctum
LS0909056M,Noctuidae_Cucullia_spproblematic
...

Base composition:
    a     c     g     t 
0.299 0.156 0.145 0.400 

BarcodingR documentation built on April 14, 2020, 6:04 p.m.