summarize.ref: Summarize Reference Data

In BarcodingR: Species Identification using DNA Barcodes

Description

Summarize taxon information, sequence statistics,barcodes numbers per species for reference dataset.

Usage

summarize.ref(ref, taxonStat = TRUE, seqStat = TRUE, barcodeStat = TRUE)

Arguments

ref	object of class "DNAbin" used as a reference dataset, which contains taxon information, or just an array containing taxon information only.
taxonStat	logic value to indicate whether the item is calculated only when ref is an object of class "DNAbin".
seqStat	logic value to indicate whether the item is calculated
barcodeStat	logic value to indicate whether the item is calculated

Value

a list containing taxon statistics, sequence statistics, population parameters,barcoding statistics ()

Author(s)

Ai-bing ZHANG, Meng-di HAO, CNU, Beijing, CHINA.

References

zhangab2008(at)mail.cnu.edu.cn./zhangab2008(at)gmail.com.

Examples

data(TibetanMoth)
s.r<-summarize.ref(TibetanMoth,taxonStat=TRUE,seqStat=TRUE,barcodeStat=TRUE)
s.r

BarcodingR documentation built on April 14, 2020, 6:04 p.m.