barcodes.eval: Barcodes Evaluation
In BarcodingR: Species Identification using DNA Barcodes

Description Usage Arguments Value Author(s) References See Also Examples

Evaluate two barcodes using species identification success rate criteria.

1	barcodes.eval(barcode1, barcode2, kmer1 = kmer1, kmer2 = kmer2)

`barcode1`	object of class "DNAbin" based on barcode1, which contains taxon information.
`barcode2`	object of class "DNAbin" based on barcode2, which contains taxon information.
`kmer1`	a numeric to indicate the length of kmer1 for barcode1, the optimal kmer could be found by the function optimize.kmer() before running this function.
`kmer2`	a numeric to indicate the length of kmer2 for barcode2, see above.

a list containing p_value of prop.test(), and so on.

Ai-bing ZHANG, PhD. CNU, Beijing, CHINA.

zhangab2008 (at) mail. cnu. edu. cn.

prop.test()

data(TibetanMoth) 
barcode1<-as.DNAbin(as.character(TibetanMoth[1:30,]))
barcode2<-barcode1
b.eval<-barcodes.eval(barcode1,barcode2,kmer1=1,kmer2=3)
b.eval