| .JAGS_add_priors.fun |
Source code
|
| .JAGS_bridgesampling_posterior_info |
Source code
|
| .JAGS_bridgesampling_posterior_info.PP |
Source code
|
| .JAGS_bridgesampling_posterior_info.factor |
Source code
|
| .JAGS_bridgesampling_posterior_info.simple |
Source code
|
| .JAGS_bridgesampling_posterior_info.vector |
Source code
|
| .JAGS_bridgesampling_posterior_info.weightfunction |
Source code
|
| .JAGS_get_inits.fun |
Source code
|
| .JAGS_init.PP |
Source code
|
| .JAGS_init.factor |
Source code
|
| .JAGS_init.mixture |
Source code
|
| .JAGS_init.simple |
Source code
|
| .JAGS_init.spike_and_slab |
Source code
|
| .JAGS_init.vector |
Source code
|
| .JAGS_init.weightfunction |
Source code
|
| .JAGS_marglik_parameters.PP |
Source code
|
| .JAGS_marglik_parameters.factor |
Source code
|
| .JAGS_marglik_parameters.simple |
Source code
|
| .JAGS_marglik_parameters.vector |
Source code
|
| .JAGS_marglik_parameters.weightfunction |
Source code
|
| .JAGS_marglik_parameters_formula_get |
Source code
|
| .JAGS_marglik_priors.PP |
Source code
|
| .JAGS_marglik_priors.factor |
Source code
|
| .JAGS_marglik_priors.simple |
Source code
|
| .JAGS_marglik_priors.vector |
Source code
|
| .JAGS_marglik_priors.weightfunction |
Source code
|
| .JAGS_monitor.PP |
Source code
|
| .JAGS_monitor.factor |
Source code
|
| .JAGS_monitor.mixture |
Source code
|
| .JAGS_monitor.simple |
Source code
|
| .JAGS_monitor.spike_and_slab |
Source code
|
| .JAGS_monitor.vector |
Source code
|
| .JAGS_monitor.weightfunction |
Source code
|
| .JAGS_parameter_to_precision |
Source code
|
| .JAGS_prior.PP |
Source code
|
| .JAGS_prior.factor |
Source code
|
| .JAGS_prior.mixture |
Source code
|
| .JAGS_prior.simple |
Source code
|
| .JAGS_prior.spike_and_slab |
Source code
|
| .JAGS_prior.vector |
Source code
|
| .JAGS_prior.weightfunction |
Source code
|
| .JAGS_prior_factor_names |
Source code
|
| .JAGS_random_effect_formula |
Source code
|
| .JASP_progress_bar_start |
Source code
|
| .JASP_progress_bar_tick |
Source code
|
| .Savage_Dickey_BF.fun |
Source code
|
| .Savage_Dickey_BF.kd |
Source code
|
| .Savage_Dickey_BF.normal |
Source code
|
| .add_JAGS_matrix |
Source code
|
| .add_JAGS_vector |
Source code
|
| .add_intercept_to_formula |
Source code
|
| .as_mixed_posteriors.factor |
Source code
|
| .as_mixed_posteriors.mixture |
Source code
|
| .as_mixed_posteriors.simple |
Source code
|
| .as_mixed_posteriors.spike_and_slab |
Source code
|
| .as_mixed_posteriors.vector |
Source code
|
| .as_mixed_posteriors.weightfunction |
Source code
|
| .as_mixed_priors |
Source code
|
| .as_mixed_priors.factor |
Source code
|
| .as_mixed_priors.mixture |
Source code
|
| .as_mixed_priors.simple |
Source code
|
| .as_mixed_priors.spike_and_slab |
Source code
|
| .as_mixed_priors.vector |
Source code
|
| .as_mixed_priors.weightfunction |
Source code
|
| .center_priors |
Source code
|
| .check_JAGS_syntax |
Source code
|
| .check_and_name_parameters |
Source code
|
| .check_and_set_truncation |
Source code
|
| .check_log |
Source code
|
| .check_log.p |
Source code
|
| .check_lower.tail |
Source code
|
| .check_n |
Source code
|
| .check_p |
Source code
|
| .check_parameter |
Source code
|
| .check_parameter_dimensions |
Source code
|
| .check_parameter_negative |
Source code
|
| .check_parameter_positive |
Source code
|
| .check_parameter_range |
Source code
|
| .check_parameter_weigthfunction |
Source code
|
| .check_prior |
Source code
|
| .check_prior_list |
Source code
|
| .check_q |
Source code
|
| .check_rstan |
Source code
|
| .check_runjags |
Source code
|
| .check_table_types |
Source code
|
| .check_transformation_input |
Source code
|
| .check_x |
Source code
|
| .clean_from_expression |
Source code
|
| .density.prior.PETPEESE |
Source code
|
| .density.prior.orthonormal_or_meandif |
Source code
|
| .density.prior.point |
Source code
|
| .density.prior.simple |
Source code
|
| .density.prior.spike_and_slab |
Source code
|
| .density.prior.weightfunction |
Source code
|
| .density.prior_need_samples |
Source code
|
| .density.prior_transformation_functions |
Source code
|
| .density.prior_transformation_inv_x |
Source code
|
| .density.prior_transformation_x |
Source code
|
| .density.prior_transformation_y |
Source code
|
| .density.prior_type |
Source code
|
| .depreciate.transform_orthonormal |
Source code
|
| .diagnostics_plot_data |
Source code
|
| .diagnostics_plot_data_autocorrelation |
Source code
|
| .diagnostics_plot_data_density |
Source code
|
| .diagnostics_plot_data_trace |
Source code
|
| .ensemble_table_foundation |
Source code
|
| .extract_expressions |
Source code
|
| .extract_random_effects |
Source code
|
| .extract_stan |
Source code
|
| .fit_to_posterior |
Source code
|
| .format_column |
Source code
|
| .format_column_names |
Source code
|
| .geom_diagnostics.autocorrelation |
Source code
|
| .geom_diagnostics.density |
Source code
|
| .geom_diagnostics.trace |
Source code
|
| .get_combined_parameter_scaling_factor_matrix |
Source code
|
| .get_grouping_factor |
Source code
|
| .get_parameter_scaling_factor_matrix |
Source code
|
| .get_prior_factor_level_names |
Source code
|
| .get_prior_factor_levels |
Source code
|
| .get_prior_factor_list_type |
Source code
|
| .get_spike_and_slab_inclusion |
Source code
|
| .get_spike_and_slab_variable |
Source code
|
| .has_expression |
Source code
|
| .has_random_effects |
Source code
|
| .inclusion_BF.margliks |
Source code
|
| .inclusion_BF.probs |
Source code
|
| .interpret.BF |
Source code
|
| .interpret.par |
Source code
|
| .interpret.specification |
Source code
|
| .interpret.specification2 |
Source code
|
| .is.wholenumber |
Source code
|
| .is_prior_default_range |
Source code
|
| .is_prior_expression |
Source code
|
| .is_prior_interaction |
Source code
|
| .lines_diagnostics.autocorrelation |
Source code
|
| .lines_diagnostics.density |
Source code
|
| .lines_diagnostics.trace |
Source code
|
| .mdone.sided_fixed |
Source code
|
| .mdone.sided_general |
Source code
|
| .mdone.sided_monotonic |
Source code
|
| .mean.weightfunction |
Source code
|
| .mix_posteriors.factor |
Source code
|
| .mix_posteriors.simple |
Source code
|
| .mix_posteriors.vector |
Source code
|
| .mix_posteriors.weightfunction |
Source code
|
| .mix_priors |
Source code
|
| .mix_priors.factor |
Source code
|
| .mix_priors.simple |
Source code
|
| .mix_priors.vector |
Source code
|
| .mix_priors.weightfunction |
Source code
|
| .mpone.sided_fixed |
Source code
|
| .mpone.sided_general |
Source code
|
| .mpone.sided_monotonic |
Source code
|
| .mqone.sided_fixed |
Source code
|
| .mqone.sided_general |
Source code
|
| .mqone.sided_monotonic |
Source code
|
| .onLoad |
Source code
|
| .plot.prior.point |
Source code
|
| .plot_data_prior_list.PETPEESE |
Source code
|
| .plot_data_prior_list.simple |
Source code
|
| .plot_data_prior_list.weightfunction |
Source code
|
| .plot_data_samples.PETPEESE |
Source code
|
| .plot_data_samples.factor |
Source code
|
| .plot_data_samples.simple |
Source code
|
| .plot_data_samples.weightfunction |
Source code
|
| .plot_models.simple |
Source code
|
| .plot_models_data_posterior |
Source code
|
| .plot_models_data_prior |
Source code
|
| .plot_prior_list.both |
Source code
|
| .plot_prior_list.factor |
Source code
|
| .print.prior.simple |
Source code
|
| .prior_C |
Source code
|
| .prior_C1 |
Source code
|
| .prior_C2 |
Source code
|
| .prior_bernoulli |
Source code
|
| .prior_beta |
Source code
|
| .prior_cauchy |
Source code
|
| .prior_clean_input_name |
Source code
|
| .prior_exp |
Source code
|
| .prior_expression_to_character |
Source code
|
| .prior_gamma |
Source code
|
| .prior_informed.medicine_effect |
Source code
|
| .prior_informed.medicine_heterogeneity |
Source code
|
| .prior_informed.psychology |
Source code
|
| .prior_invgamma |
Source code
|
| .prior_lognormal |
Source code
|
| .prior_mcauchy |
Source code
|
| .prior_mnormal |
Source code
|
| .prior_mpoint |
Source code
|
| .prior_mt |
Source code
|
| .prior_normal |
Source code
|
| .prior_point |
Source code
|
| .prior_t |
Source code
|
| .prior_uniform |
Source code
|
| .prior_weightfunction_one.sided |
Source code
|
| .prior_weightfunction_one.sided.fixed |
Source code
|
| .prior_weightfunction_two.sided |
Source code
|
| .prior_weightfunction_two.sided.fixed |
Source code
|
| .range.prior_quantile_default |
Source code
|
| .remove_expressions |
Source code
|
| .remove_grouping_factor |
Source code
|
| .remove_random_effects |
Source code
|
| .remove_response |
Source code
|
| .rone.sided_fixed |
Source code
|
| .rone.sided_general |
Source code
|
| .rone.sided_monotonic |
Source code
|
| .runjags_conditional_warning |
Source code
|
| .runjags_summary_fast |
Source code
|
| .set_spike_and_slab_variable_attr |
Source code
|
| .simplify_prior_list |
Source code
|
| .string_center |
Source code
|
| .string_left |
Source code
|
| .var.weightfunction |
Source code
|
| .weightfunctions_check_alpha |
Source code
|
| .weightfunctions_check_omega |
Source code
|
| BayesTools |
Man page
|
| BayesTools-package |
Man page
|
| BayesTools_ensemble_tables |
Man page
|
| BayesTools_model_tables |
Man page
|
| JAGS_add_priors |
Man page
Source code
|
| JAGS_bridgesampling |
Man page
Source code
|
| JAGS_bridgesampling_posterior |
Man page
Source code
|
| JAGS_check_and_list |
Man page
|
| JAGS_check_and_list_autofit_settings |
Man page
Source code
|
| JAGS_check_and_list_fit_settings |
Man page
Source code
|
| JAGS_check_convergence |
Man page
Source code
|
| JAGS_diagnostics |
Man page
Source code
|
| JAGS_diagnostics_autocorrelation |
Man page
Source code
|
| JAGS_diagnostics_density |
Man page
Source code
|
| JAGS_diagnostics_trace |
Man page
Source code
|
| JAGS_estimates_empty_table |
Man page
|
| JAGS_estimates_table |
Man page
|
| JAGS_evaluate_formula |
Man page
Source code
|
| JAGS_extend |
Man page
Source code
|
| JAGS_fit |
Man page
Source code
|
| JAGS_formula |
Man page
Source code
|
| JAGS_get_inits |
Man page
Source code
|
| JAGS_inference_empty_table |
Man page
|
| JAGS_inference_table |
Man page
|
| JAGS_marglik_parameters |
Man page
Source code
|
| JAGS_marglik_parameters_formula |
Man page
Source code
|
| JAGS_marglik_priors |
Man page
Source code
|
| JAGS_marglik_priors_formula |
Man page
Source code
|
| JAGS_parameter_names |
Man page
Source code
|
| JAGS_summary_table |
Man page
|
| JAGS_to_monitor |
Man page
Source code
|
| Savage_Dickey_BF |
Man page
Source code
|
| add_column |
Man page
Source code
|
| as_marginal_inference |
Man page
Source code
|
| as_mixed_posteriors |
Man page
Source code
|
| bridgesampling_object |
Man page
Source code
|
| ccdf |
Man page
Source code
|
| ccdf.prior |
Man page
Source code
|
| cdf |
Man page
Source code
|
| cdf.prior |
Man page
Source code
|
| check_bool |
Man page
Source code
|
| check_char |
Man page
Source code
|
| check_input |
Man page
|
| check_int |
Man page
Source code
|
| check_list |
Man page
Source code
|
| check_real |
Man page
Source code
|
| compute_inference |
Man page
Source code
|
| contr.BayesTools |
Man page
|
| contr.independent |
Man page
Source code
|
| contr.meandif |
Man page
Source code
|
| contr.orthonormal |
Man page
Source code
|
| density.prior |
Man page
Source code
|
| dmpoint |
Man page
Source code
|
| dpoint |
Man page
Source code
|
| ensemble_diagnostics_empty_table |
Man page
Source code
|
| ensemble_diagnostics_table |
Man page
Source code
|
| ensemble_estimates_empty_table |
Man page
Source code
|
| ensemble_estimates_table |
Man page
Source code
|
| ensemble_inference |
Man page
Source code
|
| ensemble_inference_empty_table |
Man page
Source code
|
| ensemble_inference_table |
Man page
Source code
|
| ensemble_summary_empty_table |
Man page
Source code
|
| ensemble_summary_table |
Man page
Source code
|
| format_BF |
Man page
Source code
|
| format_parameter_names |
Man page
Source code
|
| geom_prior |
Man page
|
| geom_prior_list |
Man page
Source code
|
| inclusion_BF |
Man page
Source code
|
| interpret |
Man page
Source code
|
| interpret2 |
Man page
Source code
|
| is.prior |
Man page
Source code
|
| is.prior.PEESE |
Man page
Source code
|
| is.prior.PET |
Man page
Source code
|
| is.prior.discrete |
Man page
Source code
|
| is.prior.factor |
Man page
Source code
|
| is.prior.independent |
Man page
Source code
|
| is.prior.meandif |
Man page
Source code
|
| is.prior.mixture |
Man page
Source code
|
| is.prior.none |
Man page
Source code
|
| is.prior.orthonormal |
Man page
Source code
|
| is.prior.point |
Man page
Source code
|
| is.prior.simple |
Man page
Source code
|
| is.prior.spike_and_slab |
Man page
Source code
|
| is.prior.treatment |
Man page
Source code
|
| is.prior.vector |
Man page
Source code
|
| is.prior.weightfunction |
Man page
Source code
|
| kitchen_rolls |
Man page
|
| lines.prior |
Man page
|
| lines_prior_list |
Man page
Source code
|
| lpdf |
Man page
Source code
|
| lpdf.prior |
Man page
Source code
|
| marginal_estimates_table |
Man page
Source code
|
| marginal_inference |
Man page
Source code
|
| marginal_posterior |
Man page
Source code
|
| mccdf |
Man page
Source code
|
| mccdf.prior |
Man page
Source code
|
| mcdf |
Man page
Source code
|
| mcdf.prior |
Man page
Source code
|
| mdone.sided |
Man page
Source code
|
| mdone.sided_fixed |
Man page
Source code
|
| mdtwo.sided |
Man page
Source code
|
| mdtwo.sided_fixed |
Man page
Source code
|
| mean.prior |
Man page
Source code
|
| mix_posteriors |
Man page
Source code
|
| mlpdf |
Man page
Source code
|
| mlpdf.prior |
Man page
Source code
|
| model_summary_empty_table |
Man page
Source code
|
| model_summary_table |
Man page
Source code
|
| models_inference |
Man page
Source code
|
| mpdf |
Man page
Source code
|
| mpdf.prior |
Man page
Source code
|
| mpoint |
Man page
|
| mpone.sided |
Man page
Source code
|
| mpone.sided_fixed |
Man page
Source code
|
| mptwo.sided |
Man page
Source code
|
| mptwo.sided_fixed |
Man page
Source code
|
| mqone.sided |
Man page
Source code
|
| mqone.sided_fixed |
Man page
Source code
|
| mqtwo.sided |
Man page
Source code
|
| mqtwo.sided_fixed |
Man page
Source code
|
| mquant |
Man page
Source code
|
| mquant.prior |
Man page
Source code
|
| parameter_names |
Man page
|
| pdf |
Man page
Source code
|
| pdf.default |
Source code
|
| pdf.prior |
Man page
Source code
|
| plot.prior |
Man page
Source code
|
| plot_marginal |
Man page
|
| plot_models |
Man page
Source code
|
| plot_posterior |
Man page
Source code
|
| plot_prior_list |
Man page
Source code
|
| pmpoint |
Man page
Source code
|
| point |
Man page
|
| ppoint |
Man page
Source code
|
| print.BayesTools_table |
Man page
Source code
|
| print.prior |
Man page
Source code
|
| prior |
Man page
Source code
|
| prior_PEESE |
Man page
Source code
|
| prior_PET |
Man page
Source code
|
| prior_PP |
Man page
|
| prior_factor |
Man page
Source code
|
| prior_functions |
Man page
|
| prior_functions_methods |
Man page
|
| prior_informed |
Man page
Source code
|
| prior_informed_medicine_names |
Man page
|
| prior_mixture |
Man page
Source code
|
| prior_none |
Man page
Source code
|
| prior_spike_and_slab |
Man page
Source code
|
| prior_weightfunction |
Man page
Source code
|
| qmpoint |
Man page
Source code
|
| qpoint |
Man page
Source code
|
| quant |
Man page
Source code
|
| quant.prior |
Man page
Source code
|
| range.prior |
Man page
Source code
|
| remove_column |
Man page
Source code
|
| rmpoint |
Man page
Source code
|
| rng |
Man page
Source code
|
| rng.prior |
Man page
Source code
|
| rone.sided |
Man page
Source code
|
| rone.sided_fixed |
Man page
Source code
|
| rpoint |
Man page
Source code
|
| rtwo.sided |
Man page
Source code
|
| rtwo.sided_fixed |
Man page
Source code
|
| runjags_estimates_empty_table |
Man page
Source code
|
| runjags_estimates_table |
Man page
Source code
|
| runjags_inference_empty_table |
Man page
Source code
|
| runjags_inference_table |
Man page
Source code
|
| sd |
Man page
Source code
|
| sd.default |
Source code
|
| sd.prior |
Man page
Source code
|
| stan_estimates_table |
Man page
Source code
|
| transform_factor_samples |
Man page
Source code
|
| transform_meandif_samples |
Man page
Source code
|
| transform_orthonormal_samples |
Man page
Source code
|
| transform_treatment_samples |
Source code
|
| update.BayesTools_table |
Man page
Source code
|
| var |
Man page
Source code
|
| var.default |
Source code
|
| var.prior |
Man page
Source code
|
| weightfunctions |
Man page
|
| weightfunctions_mapping |
Man page
Source code
|
