BoSSA: a Bunch of Structure and Sequence Analysis

Share:

Reads and plots placements obtained using pplacer/guppy (see http://matsen.fhcrc.org/pplacer/ for details). Read PDB file (protein 3D structure file).

Author
pierre lefeuvre
Date of publication
2016-10-12 21:02:27
Maintainer
pierre lefeuvre <pierre.lefeuvre@cirad.fr>
License
GPL
Version
2.0

View on CRAN

Man pages

BoSSA-package
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("BoSSA")}
pplace
a placement object as obtained with the read_sqlite function
pplace_to_matrix
pplace to contingency matrix
pplace_to_table
merge the multiclass and the placement table of pplace object
pplace_tree
plot a pplace object
read_pdb
read Protein Data Bank (PDB) file
read_sqlite
read a pplacer/guppy sqlite file
sub_pplace
subsets a pplace object

Files in this package

BoSSA
BoSSA/inst
BoSSA/inst/extdata
BoSSA/inst/extdata/example.jplace
BoSSA/inst/extdata/1L2M.pdb
BoSSA/inst/extdata/example.sqlite
BoSSA/NAMESPACE
BoSSA/data
BoSSA/data/pplace.rda
BoSSA/R
BoSSA/R/pplace_tree.R
BoSSA/R/read_jplace.R
BoSSA/R/pplace_to_table.R
BoSSA/R/pplace_to_matrix.R
BoSSA/R/read_sqlite.R
BoSSA/R/read_pdb.R
BoSSA/R/get_edge.R
BoSSA/R/sub_pplace.R
BoSSA/MD5
BoSSA/build
BoSSA/build/partial.rdb
BoSSA/DESCRIPTION
BoSSA/man
BoSSA/man/read_sqlite.Rd
BoSSA/man/pplace_to_table.Rd
BoSSA/man/pplace_tree.Rd
BoSSA/man/read_pdb.Rd
BoSSA/man/BoSSA-package.Rd
BoSSA/man/sub_pplace.Rd
BoSSA/man/pplace_to_matrix.Rd
BoSSA/man/pplace.Rd