write_jplace: Write a jplace or pplace object to the disk

In BoSSA: A Bunch of Structure and Sequence Analysis

Description

Write a jplace or pplace object to the disk in the jplace JSON format

Usage

write_jplace(x,outfile)

Arguments

x	A pplace or jplace object
outfile	The name of the output file

Note

Note that the placement mass (potentially) available from the original files are imported into R but aren't use in the analysis. Anyway, the write_jplace function takes into account possible weight/mass information available in the the "nm" column of the multiclass table for jplace objects and in the "mass" column from the placement_names table for the pplace objects. The values in these column can be edited before writing the jplace file if one want to use distinct mass/weight in downtstream analysis (e.g. using the guppy program functionalities).

Author(s)

pierre lefeuvre

Examples

data(pplace)
## Not run: 
write_jplace(pplace,"test.jplace")

## End(Not run)

BoSSA documentation built on Oct. 23, 2020, 7:55 p.m.