read_jplace: Read a jplace file
In BoSSA: A Bunch of Structure and Sequence Analysis

Description Usage Arguments Details Value Author(s) See Also

Read a jplace file

1	read_jplace(jplace_file, full = TRUE)

`jplace_file`	A jplace file name
`full`	If set to FALSE, only the tree is read from the jplace file

When the jplace or sqlite files are imported into R, the node numbering available in the original file is converted to the class "phylo" numbering. The class phylo is defined in the "ape" package.

A list with

`arbre`	The tree in class "phylo" over wich placements are performed
`placement`	The placement table
`multiclass`	The multiclass table
`run`	The command line used to obtained the jplace file