Files in CALANGO
Comparative Analysis with Annotation-Based Genomic Components
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/do_analysis.R
R/GroupElementCount.R
R/check_inputs_correlation.R
R/retrieve_data_files.R
R/FindContrasts.R
R/GenerateTree.R
R/AnnotateResults.R
R/clean_data_correlation.R
R/run_CALANGO.R
R/make_correlation_report.R
R/clean_data.R
R/make_significance_report.R
R/do_analysis_correlation.R
R/retrieve_calanguize_genomes.R
R/load_data_correlation.R
R/check_inputs_significance.R
R/do_analysis_significance.R
R/GenerateGenomeVector.R
R/utils_ontology_manipulation.R
R/restore_relative_paths.R
R/FindCorrelations.R
R/activate_CRAN_dependencies_from_Rmd_reports.R
R/save_tsv_files.R
R/clean_data_significance.R
R/load_data.R
R/print_results_correlations.R
R/load_data_significance.R
R/check_bioc_dependencies.R
R/install_bioc_dependencies.R
R/make_report.R
R/read_calango_file.R
R/AddGenomeVectors.R
R/set_absolute_paths.R
R/FileAddition.R
R/CALANGO_brewer_pal.R
R/parse_GenomeMap.R
inst/CITATION
inst/doc/CALANGO_Parameters.Rmd
inst/doc/CALANGO_Parameters.html
inst/extdata/calanguize_genomes.zip
inst/extdata/report_files/table.Rmd
inst/extdata/report_files/about.Rmd
inst/extdata/report_files/_site.yml
inst/extdata/report_files/heatmap_phylo_raw.Rmd
inst/extdata/report_files/index.Rmd
inst/extdata/report_files/q_value_scatter.Rmd
inst/extdata/report_files/heatmap_phylo_norm.Rmd
inst/extdata/report_files/heatmap_phylo_perc.Rmd
inst/images/CALANGO_LOGO_whiteBG.png
inst/images/CALANGO_interactive_table.png
inst/images/scatterplot_data.png
inst/images/scatterplot_rank.png
inst/images/scatterplot_phylogeny_aware_linear_model.png
inst/images/scatterplot_q_values.png
inst/images/KOMODO2_logo.png
inst/scripts/parse_interproscan_output_IPR.pl
inst/scripts/parse_interproscan_output_feature2GO.pl
inst/scripts/generate_symbolic_link.pl
inst/scripts/parse_interproscan_output.pl
inst/scripts/parse_interproscan_output_gene2SUPERFAMILY.pl
inst/scripts/count_GO_gene2GO.pl
inst/scripts/count_GO_feature2GO.pl
inst/scripts/parse_interproscan_output_gene2GO.pl
inst/scripts/parse_busco.pl
build/vignette.rds
vignettes/CALANGO_Parameters.Rmd
man/retrieve_calanguize_genomes.Rd
man/make_report.Rd
man/run_CALANGO.Rd
man/install_bioc_dependencies.Rd
man/retrieve_data_files.Rd
