make_report: Prepare and render the HTML5 report

In CALANGO: Comparative Analysis with Annotation-Based Genomic Components

Prepare and render the HTML5 report

Description

This script generates the HTML5 report based on an enriched 'CALANGO'-type list output by 'run_CALANGO()'.

Usage

make_report(defs, render.report = TRUE)

Arguments

defs	an enriched 'CALANGO'-type list generated by 'run_CALANGO()'
render.report	logical: should the HTML5 report be generated (for internal use only)

Value

Updated 'defs' list, containing:

• All input parameters originally passed (see [run_CALANGO()] for details).

• Derived fields calculated for displaying the results, including several statistical summaries of the data (including correlations, contrasts, covariances, p-values).

This function is mainly called for its side effect, namely the generation of an HTML5 report of the analysis, which is saved to the folder indicated in 'defs$output.dir'.

CALANGO documentation built on April 26, 2023, 5:13 p.m.