install_bioc_dependencies: Install Bioconductor dependencies

In CALANGO: Comparative Analysis with Annotation-Based Genomic Components

Install Bioconductor dependencies

Description

This function installs the latest versions of all Bioconductor packages required for the report generation, namely:

• AnnotationDbi

• KEGGREST

• GO.db

Usage

install_bioc_dependencies(bioc.args = list(), force = FALSE)

Arguments

bioc.args	list containing further arguments to be passed down to 'BiocManager::install()'.
force	logical: reinstall already-installed packages?

Details

It is essential that these Bioconductor packages be installed for CALANGO to work properly. It uses 'BiocManager::install()' for installing Bioconductor packages. Further arguments to this function are passed as a list.

Value

No return value, called for side effects.

Examples

## Not run: 
  install_bioc_dependencies()

## End(Not run)

CALANGO documentation built on April 26, 2023, 5:13 p.m.