Man pages for CIDER
Meta-Clustering for scRNA-Seq Integration and Evaluation
| calculateDistMatOneModel | Calculate Distance Matrix Using a Single Model |
| downsampling | Downsampling Cells |
| estimateProb | Estimate the Empirical Probability of Whether Two Set of... |
| finalClustering | Final Clustering Step for Meta-Clustering |
| gatherInitialClusters | Gather Initial Cluster Names |
| getDistMat | Calculate the Similarity Matrix |
| getGroupFit | Calculate IDER-Based Similarity Between Two Groups |
| getIDEr | Compute IDER-Based Similarity |
| hdbscan.seurat | Initial Clustering for Evaluating Integration |
| initialClustering | Initial Clustering |
| mergeInitialClusters | Merge Initial Clusters |
| pancreas_meta | Pancreas Metadata |
| plotDistMat | Plot Similarity Matrix with pheatmap |
| plotHeatmap | Plot Heatmap for the IDER-Based Similarity Matrix |
| plotNetwork | Plot Network Graph |
| scatterPlot | Scatterplot by a selected feature |
