plotHeatmap: Plot Heatmap for the IDER-Based Similarity Matrix
In CIDER: Meta-Clustering for scRNA-Seq Integration and Evaluation
plotHeatmap R Documentation
Plot Heatmap for the IDER-Based Similarity Matrix
Description
This function generates a heatmap that visualises the similarity between shared
groups across batches, as computed by getIDEr.
Usage
plotHeatmap(seu, ider, batch.var = "Batch")
Arguments
seu
A Seurat object.
ider
The output list from the getIDEr function.
batch.var
Character string specifying the metadata column that contains batch information. Default is "Batch".
Value
A heatmap displaying the similarity between shared groups across batches.
See Also
getIDEr
CIDER documentation built on April 4, 2025, 2:28 a.m.
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| plotHeatmap | R Documentation |
Plot Heatmap for the IDER-Based Similarity Matrix
Description
This function generates a heatmap that visualises the similarity between shared
groups across batches, as computed by getIDEr.
Usage
plotHeatmap(seu, ider, batch.var = "Batch")
Arguments
seu |
A Seurat object. |
ider |
The output list from the |
batch.var |
Character string specifying the metadata column that contains batch information. Default is "Batch". |
Value
A heatmap displaying the similarity between shared groups across batches.
See Also
getIDEr
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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