getGroupFit: Calculate IDER-Based Similarity Between Two Groups

In CIDER: Meta-Clustering for scRNA-Seq Integration and Evaluation

Calculate IDER-Based Similarity Between Two Groups

Description

This function calculates the IDER-based similarity between two groups using a linear model.

Usage

getGroupFit(logCPM, design, contrast_m)

Arguments

logCPM	A numeric matrix of log-transformed counts per million.
design	A design matrix for the differential expression analysis.
contrast_m	A contrast matrix specifying the comparison between the two groups.

Value

A numeric value representing the IDER-based similarity between the two groups.

CIDER documentation built on April 4, 2025, 2:28 a.m.