scatterPlot: Scatterplot by a selected feature

In CIDER: Meta-Clustering for scRNA-Seq Integration and Evaluation

Scatterplot by a selected feature

Description

Scatterplot of a Seurat object based on dimension reduction.

Usage

scatterPlot(
  seu,
  reduction,
  colour.by,
  colvec = NULL,
  title = NULL,
  sort.by.numbers = TRUE,
  viridis_option = "B"
)

Arguments

seu	Seurat S4 object after the step of getIDER. Required.
reduction	Character. The dimension reduction used to plot. Common options: "pca", "tsne", "umap". The availability of dimension reduction can be checked by Reductions(seu).
colour.by	Character. One of the column names of [e-mail]. Can be either discreet or continuous variables.
colvec	A vector of Hex colour codes. If no value is given (default), a vector of 74 colours will be used.
title	Character. Title of the figure.
sort.by.numbers	Boolean. Whether to sort the groups by the number of cells.(Default: True)
viridis_option	viridis_option. (Default: B)

Value

A ggplot2 scatter plot

CIDER documentation built on April 4, 2025, 2:28 a.m.