R/summaryCNOGpro.R

Defines functions summaryCNOGpro

Documented in summaryCNOGpro

summaryCNOGpro <-
function(experiment){
  cat("CNOGpro copy number analysis experiment of", experiment$Name, "\n")
  cat("Windowlength:", experiment$windowlength,"\n\n")
  cat("Summary statistics of chromosome:", experiment$accession,"\n")
  cat("Length: ", experiment$chrlength,"\tNumber of genetic elements: ", nrow(experiment$genes),"\tMean coverage: ",experiment$mean,"\tVariance: ",experiment$variance,"\n")
  if(experiment$is_GC_normalized) cat("Data have been normalized by GC content\n") 
  else cat("Data not yet normalized\n")  
}

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CNOGpro documentation built on May 2, 2019, 5:57 a.m.