Man pages for CRMetrics
Cell Ranger Output Filtering and Metrics Visualization
| addDetailedMetricsInner | Add detailed metrics (= total UMI count and gene count per... |
| addPlotStats | Add statistics to plot |
| addPlotStatsSamples | Add statistics to plot |
| addSummaryMetrics | Add summary metrics |
| checkCompGroup | Set correct 'comp.group' parameter |
| checkCompMeta | Check whether 'comp.group' is a column name in metadata |
| checkDataPath | Check data path |
| createUniqueCellNames | Create unique cell names |
| CRMetrics | CRMetrics class object |
| filterVector | Create filtering vector |
| getH5Paths | Get H5 file paths |
| labelsFilter | Get labels for percentage of filtered cells |
| percFilter | Calculate percentage of filtered cells |
| plotGeom | Plot the data as points, as bars as a histogram, or as a... |
| read10x | Load 10x count matrices |
| read10xH5 | Read 10x or cellbenders HDF5 files |
| readFlex | Load 10x flex count matrices |
| readParse | Load Parse count matrices |
