getH5Paths: Get H5 file paths

In CRMetrics: Cell Ranger Output Filtering and Metrics Visualization

Get H5 file paths

Description

Get file paths for H5 files

Usage

getH5Paths(data.path, samples = NULL, type = NULL, technology = NULL)

Arguments

data.path	character Path for directory containing sample-wise directories with Cell Ranger count/Parse outputs
samples	character Sample names to include (default = NULL)
type	character Type of H5 files to get paths for, one of "raw", "filtered" (Cell Ranger count outputs, does not work for Parse), "cellbender" (raw CellBender outputs), "cellbender_filtered" (CellBender filtered outputs) (default = "type")
technology	character Used technology ("parse", "10x", "10xflex", "10xmultiome") (default = NULL)

CRMetrics documentation built on June 2, 2026, 9:08 a.m.