Description Usage Arguments Value Author(s) Examples
E-step of EM algorithm for multivariate clustering of SNAs. Used in
canopy.cluster
.
1 | canopy.cluster.Estep(Tau, Mu, R, X)
|
Tau |
prior for proportions of mutation clusters |
Mu |
MAF centroid for each mutation cluster in each sample |
R |
alternative allele read depth matrix |
X |
total read depth matrix |
Matrix of posterior probability of cluster assignment for each mutation.
Yuchao Jiang yuchaoj@wharton.upenn.edu
1 2 3 4 5 6 |
Loading required package: ape
Loading required package: fields
Loading required package: spam
Loading required package: dotCall64
Loading required package: grid
Spam version 2.1-1 (2017-07-02) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.
Attaching package: 'spam'
The following objects are masked from 'package:base':
backsolve, forwardsolve
Loading required package: maps
Loading required package: pheatmap
Loading required package: scatterplot3d
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