initialsna: To initialize positions of SNAs
In Canopy: Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
Description
Usage
Arguments
Value
Author(s)
Examples
Description
To initialize positions of SNAs on the tree. Used in initialization step of
canopy.sample.
Usage
1
initialsna(tree,sna.name)
Arguments
tree
input tree
sna.name
vector of input SNA names
Value
Matrix specifying positions of SNAs (start and end node).
Author(s)
Yuchao Jiang yuchaoj@wharton.upenn.edu
Examples
1
2
3
4
data(MDA231_tree)
data(MDA231)
sna.name = rownames(MDA231$R)
initialsna(MDA231_tree, sna.name)
Canopy documentation built on May 1, 2019, 7:59 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
To initialize positions of SNAs on the tree. Used in initialization step of
canopy.sample.
Usage
1 | initialsna(tree,sna.name)
|
Arguments
tree |
input tree |
sna.name |
vector of input SNA names |
Value
Matrix specifying positions of SNAs (start and end node).
Author(s)
Yuchao Jiang yuchaoj@wharton.upenn.edu
Examples
1 2 3 4 | data(MDA231_tree)
data(MDA231)
sna.name = rownames(MDA231$R)
initialsna(MDA231_tree, sna.name)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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