initialcna: To initialize positions of CNAs
In Canopy: Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
Description
Usage
Arguments
Value
Author(s)
Examples
Description
To initialize positions of CNAs on the tree. Used in initialization step of
canopy.sample.
Usage
1
initialcna(tree,cna.name)
Arguments
tree
input tree
cna.name
vector of input CNA names
Value
Matrix specifying positions of CNAs (start and end node).
Author(s)
Yuchao Jiang yuchaoj@wharton.upenn.edu
Examples
1
2
3
4
data(MDA231_tree)
data(MDA231)
cna.name = rownames(MDA231$WM)
initialcna(MDA231_tree, cna.name)
Canopy documentation built on May 1, 2019, 7:59 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
To initialize positions of CNAs on the tree. Used in initialization step of
canopy.sample.
Usage
1 | initialcna(tree,cna.name)
|
Arguments
tree |
input tree |
cna.name |
vector of input CNA names |
Value
Matrix specifying positions of CNAs (start and end node).
Author(s)
Yuchao Jiang yuchaoj@wharton.upenn.edu
Examples
1 2 3 4 | data(MDA231_tree)
data(MDA231)
cna.name = rownames(MDA231$WM)
initialcna(MDA231_tree, cna.name)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.