getVAF: To get variant allele frequency (VAF)
In Canopy: Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
Description
Usage
Arguments
Value
Author(s)
Examples
Description
To get variant allele frequency (VAF) matrix, which contains percentage of
mutant SNA alleles across samples. Used in canopy.sample.
Usage
1
getVAF(tree,Y)
Arguments
tree
input tree
Y
SNA CNA overlapping matrix
Value
Variant allele frequency matrix VAF.
Author(s)
Yuchao Jiang yuchaoj@wharton.upenn.edu
Examples
1
2
3
4
data(MDA231_tree)
data(MDA231)
Y = MDA231$Y
getVAF(MDA231_tree, Y)
Canopy documentation built on May 1, 2019, 7:59 p.m.
R Package Documentation
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Description Usage Arguments Value Author(s) Examples
Description
To get variant allele frequency (VAF) matrix, which contains percentage of
mutant SNA alleles across samples. Used in canopy.sample.
Usage
1 | getVAF(tree,Y)
|
Arguments
tree |
input tree |
Y |
SNA CNA overlapping matrix |
Value
Variant allele frequency matrix VAF.
Author(s)
Yuchao Jiang yuchaoj@wharton.upenn.edu
Examples
1 2 3 4 | data(MDA231_tree)
data(MDA231)
Y = MDA231$Y
getVAF(MDA231_tree, Y)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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