getlikelihood.sna: To get SNA likelihood of the tree
In Canopy: Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
Description
Usage
Arguments
Value
Author(s)
Examples
Description
To get SNA likelihood of the tree given tree struture and data input. Used in
canopy.sample.nocna and canopy.sample.cluster.nocna.
Usage
1
getlikelihood.sna(tree, R, X)
Arguments
tree
input tree
R
alternative allele read depth matrix
X
total read depth matrix
Value
Likelihood of sampled tree.
Author(s)
Yuchao Jiang yuchaoj@wharton.upenn.edu
Examples
1
2
3
4
5
data(MDA231)
data(MDA231_tree)
R = MDA231$R
X = MDA231$X
getlikelihood.sna(MDA231_tree, R, X)
Canopy documentation built on May 1, 2019, 7:59 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
To get SNA likelihood of the tree given tree struture and data input. Used in
canopy.sample.nocna and canopy.sample.cluster.nocna.
Usage
1 | getlikelihood.sna(tree, R, X)
|
Arguments
tree |
input tree |
R |
alternative allele read depth matrix |
X |
total read depth matrix |
Value
Likelihood of sampled tree.
Author(s)
Yuchao Jiang yuchaoj@wharton.upenn.edu
Examples
1 2 3 4 5 | data(MDA231)
data(MDA231_tree)
R = MDA231$R
X = MDA231$X
getlikelihood.sna(MDA231_tree, R, X)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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