GraphicsSPBal: Obtaining the graphic of the SPBal at all time points

In CoDaLoMic: Compositional Models to Longitudinal Microbiome Data

Obtaining the graphic of the SPBal at all time points

Description

The SPBal (of BPBM model) are ordered from highest to lowest variance percentage. The zero is highlight because the closer the value of the balance is to zero, the more similar (in terms of relative abundance) the numerator and denominator groups will be. The farther away from zero, the more different.

Usage

GraphicsSPBal(MatrizPBmodelo)

Arguments

MatrizPBmodelo

Matrix. Output of "ObtainigValueSPBal" function. MatrixSPBal is the matrix that contains the covariates of the model. The first line es equal to 1 for all columns. The other rows contain the value of one SPBal at all time points. The selected principal balance of the row i+1 has at its numerator the bacteria placed in the rows NumSPBal[[i]] of the "especie". The selected principal balance of the row i+1 has at its denominator the bacteria placed in the rows DemSPBal[[i]] of the "especie".

Value

Returns a graphic.

References

Creus-Martí, I., Moya, A., Santonja, F. J. (2022). Bayesian hierarchical compositional models for analysing longitudinal abundance data from microbiome studies. Complexity, 2022.

Examples

MatrizPBmodelo=rbind(c(1,1,1,1,1,1),c(-0.3,0.4,0.3,-0.7,-0.4,-0.6),c(0.3,0.5,-0.3,0.1,0.4,0.1))
GraphicsSPBal(MatrizPBmodelo)

CoDaLoMic documentation built on April 12, 2025, 2:18 a.m.