TableFBM: Obtainig a table with the interpretable parameters

In CoDaLoMic: Compositional Models to Longitudinal Microbiome Data

Obtainig a table with the interpretable parameters

Description

This function returns a table with the interpretable parameters of the FBM model.

Usage

TableFBM(paramEstimadosFinal, names, E)

Arguments

paramEstimadosFinal	The estimate parameters, in the following order: a11,a12,a13, a21, a22,a23, ...a(D-1)1,a(D-1)2,a(D-1)3,tau. Where D is the number of bacterial species present in the matrix especie.
names	Vector of length D. The component i has the name of the bacteria i.
E	Number of bacteria available.

Details

\mu_{it}=a_{i1}+a_{i2}\cdot\text{alr}(x_{i,(t-1)})+a_{i3}\cdot\text{Balance}(x_{i,(t-1)})\text{ for }i=1,\dots, D-1\text{ where } D \text{ is the number of bacteria}

Value

Returns a table written in latex format.

References

Creus-Martí, I., Moya, A., Santonja, F. J. (2021). A Dirichlet autoregressive model for the analysis of microbiota time-series data. Complexity, 2021, 1-16.

Examples

paramEstimadosFinal=c(1,2,3,1,2,3,1,2,3)
names=c("Bact1", "Bact2","Bact3")
E=3

TableFBM(paramEstimadosFinal,names,E)

CoDaLoMic documentation built on April 12, 2025, 2:18 a.m.