API for CodelistGenerator
Identify Relevant Clinical Codes and Evaluate Their Use
| Global functions | |
|---|---|
| .optionsDoc | Man page |
| CodelistGenerator | Man page |
| CodelistGenerator-package | Man page |
| achillesVersionDate | Source code |
| addAncestor | Source code |
| addAtribute | Source code |
| addBrand | Source code |
| addClass | Source code |
| addConcept | Source code |
| addConcepts | Man page Source code |
| addDescendants | Source code |
| addDetails | Source code |
| addDomain | Source code |
| addDoseForm | Source code |
| addDoseFormId | Source code |
| addDoseUnit | Source code |
| addIngredientCount | Source code |
| addRouteCategory | Source code |
| addVocabulary | Source code |
| ageGroupDoc | Man page |
| appendAchillesId | Source code |
| appendDescendants | Source code |
| asCodelist | Man page Source code |
| asCodelist.candidate_codes | Man page Source code |
| asCodelist.codelist | Man page Source code |
| asCodelist.codelist_with_details | Man page Source code |
| asCodelist.concept_set_expression | Man page Source code |
| asCodelistWithDetails | Man page Source code |
| asCodelistWithDetails.candidate_codes | Man page Source code |
| asCodelistWithDetails.codelist | Man page Source code |
| asCodelistWithDetails.codelist_with_details | Man page Source code |
| asConceptSetExpression | Man page Source code |
| asConceptSetExpression.codelist | Man page Source code |
| asConceptSetExpression.codelist_with_details | Man page Source code |
| assertDomain | Source code |
| assertStandardConcept | Source code |
| associatedConceptClassIds | Man page Source code |
| associatedDomains | Man page Source code |
| associatedDoseForms | Man page Source code |
| associatedDoseUnits | Man page Source code |
| associatedDrugIngredients | Man page Source code |
| associatedRelationshipIds | Man page Source code |
| associatedRouteCategories | Man page Source code |
| associatedVocabularies | Man page Source code |
| availableATC | Man page Source code |
| availableConceptClassIds | Man page Source code |
| availableDomains | Man page Source code |
| availableDoseForms | Man page Source code |
| availableDoseUnits | Man page Source code |
| availableDrugIngredients | Man page Source code |
| availableRelationshipIds | Man page Source code |
| availableRouteCategories | Man page Source code |
| availableVocabularies | Man page Source code |
| benchmarkCodelistGenerator | Man page Source code |
| buildAchillesTables | Source code |
| byConceptDoc | Man page |
| bySexDoc | Man page |
| byYearDoc | Man page |
| cdmDoc | Man page |
| checkAgeGroup | Source code |
| checkCategory | Source code |
| checkCdm | Source code |
| checkCodelist | Source code |
| checkExistentAchillesTables | Source code |
| checkInputs | Source code |
| checkNameStyle | Source code |
| checkNameStyleStratify | Source code |
| checkPath | Source code |
| codelistNameDoc | Man page |
| codesFromCohort | Man page Source code |
| codesFromConceptSet | Man page Source code |
| codesInUse | Source code |
| cohortCodelist | Man page |
| compareCodelists | Man page Source code |
| conceptClassIdsInternal | Source code |
| convertCodelist | Source code |
| correctMissingValue | Source code |
| countByDoc | Man page |
| createEmptyCodelist | Source code |
| domainDoc | Man page |
| domainsInternal | Source code |
| doseFormDoc | Man page |
| doseFormToRoute | Man page |
| doseUnitDoc | Man page |
| doseUnitsInternal | Source code |
| dropEmptyCodelist | Source code |
| drugIngredientsInternal | Source code |
| excludeCodes | Source code |
| excludeConcepts | Man page Source code |
| exportCodelist | Man page |
| exportConceptSetExpression | Man page |
| extractCodes | Source code |
| fetchAchillesCodesInUse | Source code |
| fetchAchillesCounts | Source code |
| fetchAchillesSourceCodesInUse | Source code |
| fetchBatchedDescendants | Source code |
| filterDateRange | Source code |
| filterIngredientConcepts | Source code |
| formatConceptList | Source code |
| getATCCodes | Man page Source code |
| getAchillesPersonCounts | Source code |
| getAchillesRecordCounts | Source code |
| getCandidateCodes | Man page Source code |
| getCodeUse | Source code |
| getConceptIDName | Source code |
| getDateRange | Source code |
| getDescendants | Man page Source code |
| getDescendantsAndAncestor | Source code |
| getDescendantsOnly | Source code |
| getDrugIngredientCodes | Man page Source code |
| getGroupedPersonCount | Source code |
| getGroupedRecordCount | Source code |
| getMappings | Man page Source code |
| getMatches | Source code |
| getRelevantRecords | Source code |
| getSourceCodes | Source code |
| getSummaryCounts | Source code |
| groupBy | Source code |
| groupColumnDoc | Man page |
| groupColumnStrataDoc | Man page |
| headerDoc | Man page |
| headerStrataDoc | Man page |
| hideDoc | Man page |
| hideStrataDoc | Man page |
| importCodelist | Man page |
| importConceptSetExpression | Man page |
| includeDescendantsDoc | Man page |
| ingredientRangeDoc | Man page |
| internalTableAchillesResult | Source code |
| internalTableCodeUse | Source code |
| intersectCodelists | Man page Source code |
| keepOriginalDoc | Man page |
| keepOriginalDocSubset | Man page |
| levelATCDoc | Man page |
| levelICD10Doc | Man page |
| listJsonFromPath | Source code |
| minimumCountDoc | Man page |
| mockVocabRef | Man page Source code |
| mutateColumns | Source code |
| nameStyleDoc | Man page |
| needsIdFilter | Source code |
| newCandidateCodesClass | Source code |
| newCodelist | Man page |
| newCodelistWithDetails | Man page |
| newConceptSetExpression | Man page |
| optionsCodeUse | Source code |
| prepareCodelist | Source code |
| prepareNameStyle | Source code |
| readConceptSet | Source code |
| reexports | Man page |
| reformulateTableAchilles | Source code |
| relationshipIdsInternal | Source code |
| removeClass | Source code |
| removeRepeatedIds | Source code |
| routeCategoryDoc | Man page |
| runSearch | Source code |
| searchStrategy | Man page Source code |
| standardConceptDoc | Man page |
| stratifyByBrand | Man page Source code |
| stratifyByConcept | Man page Source code |
| stratifyByDomain | Man page Source code |
| stratifyByDoseForm | Man page Source code |
| stratifyByDoseUnit | Man page Source code |
| stratifyByRouteCategory | Man page Source code |
| stratifyByVocabulary | Man page Source code |
| stratifyCodelist | Source code |
| stratifyCodelistBy | Source code |
| subsetCodelistBy | Source code |
| subsetOmopTable | Source code |
| subsetOnDomain | Man page Source code |
| subsetOnDoseForm | Man page Source code |
| subsetOnDoseUnit | Man page Source code |
| subsetOnIngredientRange | Man page Source code |
| subsetOnRouteCategory | Man page Source code |
| subsetOnVocabulary | Man page Source code |
| subsetToCodesInUse | Man page Source code |
| summariseAchillesCodeUse | Man page Source code |
| summariseCodeUse | Man page Source code |
| summariseCohortCodeUse | Man page Source code |
| summariseOrphanCodes | Man page Source code |
| supportedATC | Source code |
| tableAchillesCodeUse | Man page Source code |
| tableCodeUse | Man page Source code |
| tableCohortCodeUse | Man page Source code |
| tableDoc | Man page |
| tableOrphanCodes | Man page Source code |
| tableStyleDoc | Man page |
| tibbleToList | Source code |
| tidyWords | Source code |
| typeBroadDoc | Man page |
| typeNarrowDoc | Man page |
| typeTableDoc | Man page |
| unionCodelists | Man page Source code |
| validateAchillesId | Source code |
| validateCandidateCodes | Source code |
| vocabularyVersion | Man page Source code |
| warnMultiple | Source code |
| xDoc | Man page |
| xDocCohort | Man page |
