API for CodelistGenerator
Identify Relevant Clinical Codes and Evaluate Their Use
| Global functions | |
|---|---|
| .optionsDoc | Man page |
| CodelistGenerator | Man page |
| CodelistGenerator-package | Man page |
| achillesVersionDate | Source code |
| addAncestor | Source code |
| addDescendants | Source code |
| addDetails | Source code |
| addIngredientCount | Source code |
| ageGroupDoc | Man page |
| appendAchillesId | Source code |
| appendDescendants | Source code |
| availableATC | Man page Source code |
| availableICD10 | Man page Source code |
| availableIngredients | Man page Source code |
| buildAchillesTables | Man page Source code |
| byConceptDoc | Man page |
| bySexDoc | Man page |
| byYearDoc | Man page |
| cdmDoc | Man page |
| checkAgeGroup | Source code |
| checkCategory | Source code |
| checkCdm | Source code |
| checkExistentAchillesTables | Source code |
| checkInputs | Source code |
| checkNameStyle | Source code |
| checkPath | Source code |
| codelistFromCodelistWithDetails | Source code |
| codesFromCohort | Man page Source code |
| codesFromConceptSet | Man page Source code |
| codesInUse | Man page Source code |
| cohortCodelist | Man page |
| compareCodelists | Man page Source code |
| countByDoc | Man page |
| domainDoc | Man page |
| doseFormDoc | Man page |
| doseUnitDoc | Man page |
| emptyResultTable | Source code Source code |
| excludeCodes | Source code |
| exportCodelist | Man page |
| exportConceptSetExpression | Man page |
| extractCodes | Source code |
| fetchAchillesCodesInUse | Source code |
| fetchAchillesCounts | Source code |
| fetchAchillesSourceCodesInUse | Source code |
| fetchBatchedDescendants | Source code |
| filterDateRange | Source code |
| filterIngredientConcepts | Source code |
| filterOnDoseForm | Source code |
| formatConceptList | Source code |
| getATCCodes | Man page Source code |
| getAchillesPersonCounts | Source code |
| getAchillesRecordCounts | Source code |
| getCandidateCodes | Man page Source code |
| getCodeUse | Source code |
| getConceptClassId | Man page Source code |
| getDateRange | Source code |
| getDescendants | Man page Source code |
| getDescendantsAndAncestor | Source code |
| getDescendantsOnly | Source code |
| getDomains | Man page Source code |
| getDoseForm | Man page Source code |
| getDoseUnit | Man page Source code |
| getDrugIngredientCodes | Man page Source code |
| getGroupedPersonCount | Source code |
| getGroupedRecordCount | Source code |
| getICD10NonStandardCodes | Source code |
| getICD10StandardCodes | Man page Source code |
| getMappings | Man page Source code |
| getMatches | Source code |
| getPresentDoseForms | Source code |
| getRelationshipId | Man page Source code |
| getRelevantRecords | Source code |
| getRouteCategories | Man page Source code |
| getSummaryCounts | Source code |
| getVocabVersion | Man page Source code |
| getVocabularies | Man page Source code |
| get_subsumed_concepts | Source code |
| groupBy | Source code |
| groupColumnDoc | Man page |
| groupColumnStrataDoc | Man page |
| headerDoc | Man page |
| headerStrataDoc | Man page |
| hideDoc | Man page |
| hideStrataDoc | Man page |
| importCodelist | Man page |
| importConceptSetExpression | Man page |
| includeDescendantsDoc | Man page |
| ingredientRangeDoc | Man page |
| internalTableAchillesResult | Source code |
| internalTableCodeUse | Source code |
| internalTableUnmappedCodes | Source code |
| keepOriginalDoc | Man page |
| levelATCDoc | Man page |
| levelICD10Doc | Man page |
| listJsonFromPath | Source code |
| minimumCountDoc | Man page |
| mockVocabRef | Man page Source code |
| mutateColumns | Source code |
| nameStyleDoc | Man page |
| newCodelist | Man page |
| newCodelistWithDetails | Man page |
| newConceptSetExpression | Man page |
| optionsCodeUse | Source code |
| readConceptSet | Source code |
| reexports | Man page |
| reformulateTableAchilles | Source code |
| reformulateTableUnmappedCodes | Source code |
| removeRepeatedIds | Source code |
| routeCategoryDoc | Man page |
| runSearch | Source code |
| sourceCodesInUse | Man page Source code |
| standardConceptDoc | Man page |
| stratifyByConcept | Man page Source code |
| stratifyByDoseUnit | Man page Source code |
| stratifyByRouteCategory | Man page Source code |
| subsetOnDomain | Man page Source code |
| subsetOnDoseUnit | Man page Source code |
| subsetOnRouteCategory | Man page Source code |
| subsetToCodesInUse | Man page Source code |
| summariseAchillesCodeUse | Man page Source code |
| summariseCodeUse | Man page Source code |
| summariseCohortCodeUse | Man page Source code |
| summariseOrphanCodes | Man page Source code |
| summariseUnmappedCodes | Man page Source code |
| tableAchillesCodeUse | Man page Source code |
| tableCodeUse | Man page Source code |
| tableCohortCodeUse | Man page Source code |
| tableDoc | Man page |
| tableOrphanCodes | Man page Source code |
| tableUnmappedCodes | Man page Source code |
| tibbleToList | Source code |
| tidyWords | Source code |
| typeBroadDoc | Man page |
| typeNarrowDoc | Man page |
| typeTableDoc | Man page |
| unmappedSourceCodesInUse | Source code |
| validateAchillesId | Source code |
| xDoc | Man page |
