compnorm.contour: Contour plot of the normal distribution in S^2

In Compositional: Compositional Data Analysis

Contour plot of the normal distribution in S^2

Description

Contour plot of the normal distribution in S^2.

Usage

compnorm.contour(m, s, type = "alr", n = 100, x = NULL, cont.line = FALSE)

Arguments

m	The mean vector.
s	The covariance matrix.
type	The type of trasformation used, either the additive log-ratio ("alr"), the isometric log-ratio ("ilr") or the pivot coordinate ("pivot") transformation.
n	The number of grid points to consider over which the density is calculated.
x	This is either NULL (no data) or contains a 3 column matrix with compositional data.
cont.line	Do you want the contour lines to appear? If yes, set this TRUE.

Details

The alr or the ilr transformation is applied to the compositional data at first. Then for a grid of points within the 2-dimensional simplex the bivariate normal density is calculated and the contours are plotted along with the points.

Value

A ternary diagram with the points (if appear = TRUE) and the bivariate normal contour lines.

Author(s)

Michail Tsagris and Christos Adam.

R implementation and documentation: Michail Tsagris [e-mail] and Christos Adam [e-mail].

See Also

diri.contour, mix.compnorm.contour, bivt.contour, skewnorm.contour

Examples

x <- as.matrix(iris[, 1:3])
x <- x / rowSums(x)
y <- Compositional::alr(x)
m <- colMeans(y)
s <- cov(y)
compnorm.contour(m, s)

Compositional documentation built on Oct. 23, 2023, 5:09 p.m.