folded.contour: Contour plot of the alpha-folded model in S^2

In Compositional: Compositional Data Analysis

Contour plot of the \alpha-folded model in S^2

Description

Contour plot of the \alpha-folded model in S^2.

Usage

folded.contour(mu, su, p, a, n = 100, x = NULL, cont.line = FALSE)

Arguments

mu	The mean vector of the folded model.
su	The covariance matrix of the folded model.
p	The probability inside the simplex of the folded model.
a	The value of a for the \alpha-transformation.
n	The number of grid points to consider over which the density is calculated.
x	This is either NULL (no data) or contains a 3 column matrix with compositional data.
cont.line	Do you want the contour lines to appear? If yes, set this TRUE.

Details

The \alpha-transformation is applied to the compositional data and then for a grid of points within the 2-dimensional simplex the folded model's density is calculated and the contours are plotted.

Value

The contour plot of the folded model appears.

Author(s)

Michail Tsagris and Christos Adam.

R implementation and documentation: Michail Tsagris [e-mail] and Christos Adam [e-mail].

References

Tsagris M. and Stewart C. (2022). A Review of Flexible Transformations for Modeling Compositional Data. In Advances and Innovations in Statistics and Data Science, pp. 225–234. https://link.springer.com/chapter/10.1007/978-3-031-08329-7_10

Tsagris M. and Stewart C. (2020). A folded model for compositional data analysis. Australian and New Zealand Journal of Statistics, 62(2): 249-277. https://arxiv.org/pdf/1802.07330.pdf

See Also

alfa.contour, compnorm.contour, diri.contour, mix.compnorm.contour, bivt.contour, skewnorm.contour

Examples

x <- as.matrix(iris[, 1:3])
x <- x / rowSums(x)
a <- a.est(x)$best
mod <- alpha.mle(x, a)
folded.contour(mod$mu, mod$su, mod$p, a)

Compositional documentation built on Oct. 23, 2023, 5:09 p.m.