checkCSetStructure: A function to verify the structure of a CoreSet

In CoreGx: Classes and Functions to Serve as the Basis for Other 'Gx' Packages

Description

This function checks the structure of a PharamcoSet, ensuring that the correct annotations are in place and all the required slots are filled so that matching of cells and drugs can be properly done across different types of data and with other studies.

Usage

checkCSetStructure(cSet, plotDist = FALSE, result.dir = ".")

Arguments

cSet	A CoreSet to be verified
plotDist	Should the function also plot the distribution of molecular data?
result.dir	The path to the directory for saving the plots as a string

Value

Prints out messages whenever describing the errors found in the structure of the pset object passed in.

Examples

checkCSetStructure(Cleveland_small)

CoreGx documentation built on Dec. 20, 2019, 1:08 a.m.