Description Usage Arguments Value Examples

The function computes a Matthews correlation coefficient for two factors provided to the function. It assumes each factor is a factor of class labels, and the enteries are paired in order of the vectors.

1 | ```
mcc(x, y, nperm = 1000, setseed = 12345, nthread = 1)
``` |

`x, y` |
factor of the same length with the same number of levels |

`nperm` |
number of permutations for significance estimation. If 0, no permutation testing is done |

`setseed` |
seed for permutation testing |

`nthread` |
can parallelize permutation texting using parallel's mclapply |

A list with the MCC as the $estimate, and p value as $p.value

1 2 3 |

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