Files in DSsim

Distance Sampling Simulations

R/Simulation.R R/hn.detect.R R/message.handler.R R/Population.R R/DDF.Analysis.R R/LT.Random.Design.R R/Line.Transect.R R/data.for.distance.R R/Population.Description.R R/PT.Nested.Design.R R/Region.Table.R R/in.polygons.R R/PT.Random.Design.R R/rename.duplicates.R R/check.LinkID.order.R R/calc.poss.detect.dists.lines.largeN.R R/Single.Obs.DDF.Data.R R/calc.poss.detect.dists.lines.R R/get.surface.constant.R R/Transect.R R/create.results.arrays.R R/LT.Design.R R/calculate.fitted.R R/Point.Transect.R R/modify.strata.for.analysis.R R/LT.SegmentedGrid.Design.R R/get.bound.box.R R/get.point.sampler.info.R R/PT.Survey.R R/Population.Summary.R R/save.sim.results.R R/LT.EqAngle.ZZ.Design.R R/Sample.Table.R R/add.miss.dists.R R/check.shapefile.R R/dssim.update.R R/get.surface.gam.R R/generate.pop.D.R R/single.simulation.loop.R R/add.dist.error.R R/Survey.Results.R R/LT.SegmentedTrack.Design.R R/get.shapefile.names.R R/accumulate.PP.results.R R/calculate.scale.param.R R/setcov.R R/rtpois.R R/description.summary.R R/Class.Constructors.R R/DS.Analysis.R R/check.intersection.R R/store.ddf.results.R R/check.covariates.R R/get.line.sampler.info.R R/generate.pop.N.R R/accumulate.warnings.R R/Obs.Table.R R/PT.Design.R R/coords.from.shapefile.R R/LT.Survey.R R/simulate.detections.R R/Single.Obs.LT.Survey.R R/Region.R R/calc.area.R R/is.gap.R R/check.sim.setup.R R/generic.functions.R R/extract.spat.poly.coords.R R/Survey.R R/add.summary.results.R R/LT.Survey.Results.R R/DSM.Analysis.R R/DDF.Data.R R/LT.User.Specified.Design.R R/calc.poss.detect.dists.points.R R/LT.EqSpace.ZZ.Design.R R/PT.Systematic.Design.R R/store.dht.results.R R/add.covariate.values.R R/get.ave.density.R R/Single.Obs.PT.Survey.R R/create.bins.R R/Survey.Design.R R/Design.Summary.R R/LT.Systematic.Design.R R/Simulation.Summary.R R/Density.R R/Detectability.R R/hr.detect.R vignettes/Investigating_Covariates_and_Truncation.Rmd man/plot.LT.Survey.Results-methods.Rd man/Population.Summary-class.Rd man/DDF.Data-class.Rd man/check.sim.setup.Rd man/cov_param.Rd man/make.detectability.Rd man/create.sample.table-methods.Rd man/Obs.Table-class.Rd man/show.Simulation-methods.Rd man/get.N-methods.Rd man/description.summary.Rd man/plot.DDF.Data-methods.Rd man/make.density.Rd man/make.simulation.Rd man/plot.Density-methods.Rd man/Transect-class.Rd man/plot.Point.Transect-methods.Rd man/summary.Simulation-methods.Rd man/make.population.description.Rd man/Design.Summary-class.Rd man/create.bins.Rd man/create.region.table-methods.Rd man/Region-class.Rd man/make.region.Rd man/save.sim.results-methods.Rd man/generate.population-methods.Rd man/make.ddf.analysis.list.Rd man/add.hotspot-methods.Rd man/LT.Design-class.Rd man/make.design.Rd man/Density-class.Rd man/Region.Table-class.Rd man/Detectability-class.Rd man/Survey-class.Rd man/Simulation-class.Rd man/plot.Survey.Results-methods.Rd man/Survey.Design-class.Rd man/rename.duplicates.Rd man/plot.Detectability-methods.Rd man/LT.Survey-class.Rd man/DDF.Analysis-class.Rd man/histogram.N.ests-methods.Rd man/data.for.distance.Rd man/Single.Obs.PT.Survey-class.Rd man/plot.Region-methods.Rd man/Line.Transect-class.Rd man/PT.Survey-class.Rd man/Population.Description-class.Rd man/Survey.Results-class.Rd man/Point.Transect-class.Rd man/create.survey.results-methods.Rd man/rtpois.Rd man/run-methods.Rd man/LT.Survey.Results-class.Rd man/run.analysis-methods.Rd man/plot.Line.Transect-methods.Rd man/plot.Population-methods.Rd man/show.Simulation.Summary-methods.Rd man/Single.Obs.LT.Survey-class.Rd man/get.area-methods.Rd man/Simulation.Summary-class.Rd man/Single.Obs.DDF.Data-class.Rd man/PT.Design-class.Rd man/trunc_cov_summary.Rd man/trunc_summary.Rd man/covmod_summary.Rd man/generate.transects-methods.Rd man/transects.Rd man/Population-class.Rd man/get.distance.data-methods.Rd man/Sample.Table-class.Rd tests/test-that.R tests/testthat/test-DetectDistances.r tests/testthat/test-Constructors.r tests/testthat/test-SystematicLineSimulations.r tests/testthat/test-Parallel.r tests/testthat/test-SystematicDefaultPointSimulations.R tests/testthat/test-NestedPointSimulations.r tests/testthat/test-Intersections.r tests/testthat/test-Covariates.r tests/testthat/test-UserInput.r tests/testthat/test-BasicLineSimulations.r inst/doc/Investigating_Covariates_and_Truncation.R inst/doc/Investigating_Covariates_and_Truncation.Rmd