DivE: Diversity Estimator

R-package DivE contains functions for the DivE estimator (Laydon, D. et al., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014). The DivE estimator is a heuristic approach to estimate the number of classes or the number of species (species richness) in a population.

AuthorDaniel Laydon, Aaron Sim, Charles Bangham, Becca Asquith
Date of publication2014-04-14 19:07:04
MaintainerDaniel Laydon <d.laydon@imperial.ac.uk>
LicenseGPL (>= 2)
Version1.0

View on CRAN

Functions

Bact1 Man page
Bact2 Man page
BBprop Man page
Bfunprop Man page
BinFunk Man page
BinFunkSingleNumber Man page
comb.dm Man page
combine.criteria Man page
combined.fit Man page
convert.ranges Man page
crossings Man page
Curvature Man page
div.count Man page
DivE Man page
DivE-internal Man page
DiveMaster Man page
DiveMaster.default Man page
DivE-package Man page
divsamplenum Man page
divsamplenum.default Man page
divsubsamples Man page
divsubsamples.default Man page
divsubsamples_nested Man page
fitallSubs Man page
fitsample Man page
fitsinglemod Man page
fitsinglemod.default Man page
format.input Man page
gen.rarefac.div Man page
gen.rarefac.lengths Man page
gen.subsamp.lengths Man page
geo.mean Man page
global.fit Man page
is.mono Man page
is.slowing Man page
IsWholeNumber Man page
local.fit Man page
local.fit Man page
model.cost Man page
model.cost.abs Man page
ModelSet Man page
msr.curves Man page
multiple.scoring Man page
ParamRanges Man page
ParamSeeds Man page
plot.fitsingleMod Man page
popdiversity Man page
pred.div Man page
print.DiversityMaster Man page
print.divsubsamples Man page
print.fitsingleMod Man page
print.scoresingleMod Man page
print.summary.DiversityMaster Man page
print.summary.divsubsamples Man page
print.summary.fitsingleMod Man page
print.summary.scoresingleMod Man page
ref.area Man page
scoresinglemod Man page
scoresinglemod.default Man page
simm Man page
single.mod.score Man page
single.var Man page
summary.DiversityMaster Man page
summary.divsubsamples Man page
summary.fitsingleMod Man page
summary.scoresingleMod Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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