Curvature: Curvature
In DivE: Diversity Estimator
Curvature R Documentation
Curvature
Description
Calculates the curvature of the rarefaction curve of the full observed data.
Usage
Curvature(dss)
Arguments
dss
list of objects of class DivSubsamples.
Details
Curvature calculates the curvature of the full observed data. If dss contains more than one subsample (i.e. if length(dss)>1), the curvature of the largest subsample is calculated. If the curvature value is < 0.1, researchers should exercise caution as this is indicative of severe under-sampling, in which case DivE is prone to error.
Value
numeric, between 0 and 1
Author(s)
Daniel J. Laydon, Aaron Sim, Charles R.M. Bangham, Becca Asquith
References
Laydon, D. J., Melamed, A., Sim, A., Gillet, N. A., Sim, K., Darko, S., Kroll, S., Douek, D. C., Price, D., Bangham, C. R. M., Asquith, B., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014
See Also
DivSubsamples
Examples
# See DivSubsamples documentation for examples.
DivE documentation built on Oct. 14, 2023, 5:08 p.m.
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| Curvature | R Documentation |
Curvature
Description
Calculates the curvature of the rarefaction curve of the full observed data.
Usage
Curvature(dss)
Arguments
dss |
list of objects of class DivSubsamples. |
Details
Curvature calculates the curvature of the full observed data. If dss contains more than one subsample (i.e. if length(dss)>1), the curvature of the largest subsample is calculated. If the curvature value is < 0.1, researchers should exercise caution as this is indicative of severe under-sampling, in which case DivE is prone to error.
Value
numeric, between 0 and 1
Author(s)
Daniel J. Laydon, Aaron Sim, Charles R.M. Bangham, Becca Asquith
References
Laydon, D. J., Melamed, A., Sim, A., Gillet, N. A., Sim, K., Darko, S., Kroll, S., Douek, D. C., Price, D., Bangham, C. R. M., Asquith, B., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014
See Also
DivSubsamples
Examples
# See DivSubsamples documentation for examples.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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