Description Usage Arguments Details Value Author(s) References See Also Examples

Implements the DivE diversity estimator. Combines multiple objects of class *DiveMaster*.

1 | ```
CombDM(dmlist)
``` |

`dmlist` |
list of objects of class |

*CombDM* combines multiple objects of class *DiveMaster*. Function used if *DivE* estimation has been split into multiple, separate calls to `DiveMaster`

.

An object of class *DiveMaster*, i.e. a list of objects

`model.score ` |
a matrix of aggregated model scores |

`fmm ` |
a list of |

`ssm ` |
a matrix of scores of the fit of the models corresponding to the list of fitted models |

`estimate ` |
the estimate of species richness (number of species/classes or diversity) at population size |

`lower_estimate ` |
as per estimate value, but the lowest prediction amongst the models having the top-five scores. This is recalculated based on the combined list of models |

`upper_estimate ` |
as per estimate value, but the highest prediction amongst the models having the top-five scores. This is recalculated based on the combined list of models |

`models ` |
list of original input models |

`m ` |
number of topscoring models used for diversity estimate. This is set as the smallest |

Daniel J. Laydon, Aaron Sim, Charles R.M. Bangham, Becca Asquith

Laydon, D. J., Melamed, A., Sim, A., Gillet, N. A., Sim, K., Darko, S., Kroll, S., Douek, D. C., Price, D., Bangham, C. R. M., Asquith, B., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014

1 | ```
# See DiveMaster documentation for examples.
``` |

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