Nothing

```
setGeneric(name = ".checkFSetAndOutcomeModels",
def = function(txObj, moMain, moCont, ...){
standardGeneric(f = ".checkFSetAndOutcomeModels")
})
setMethod(f = ".checkFSetAndOutcomeModels",
signature = c(txObj = "ANY",
moMain = "ANY",
moCont = "ANY"),
definition = function(txObj, moMain, moCont, ..., data) {
return( NULL )
})
.modelObjSubsetCheckOM <- function(txObj, moMain, moCont, ..., data) {
# subsets identified in fSet and its tx options
subsets <- .getSubsets(object = txObj)
# subset to which each patient belongs
ptsSubset <- .getPtsSubset(object = txObj)
# tx received by patients
txReceived <- data[,.getTxName(object = txObj)]
# subsets to be included in fitting model(s)
subsetsModeled <- .extractModelNames(modelObj = moMain)
subsetsModeled <- c(subsetsModeled, .extractModelNames(modelObj = moCont))
subsetsModeled <- unique(x = subsetsModeled)
# identify which patients fall into these subsets
tst <- ptsSubset %in% subsetsModeled
if (any(!tst)) {
# if any patients are not included, ensure that they have only
# one tx option and received only 1 tx
subsetsNotModeled <- sort(x = unique(x = ptsSubset[!tst]))
ssList <- NULL
for (i in subsetsNotModeled) {
if (length(x = subsets[[ i ]]) == 1L) {
# if 1 feasible tx option, identify tx received
txr <- unique(x = txReceived[ptsSubset == i])
if (length(x = txr) != 1L) {
# if more than 1 tx received stop
stop("patients in subset ", i,
" received tx not in accordance with feasible tx sets;",
" subset must be modeled", call. = FALSE)
} else {
ssList <- c(ssList, i)
}
} else {
stop("subset ", i, " has > 1 tx; subset must be modeled")
}
}
if (!is.null(x = ssList)) {
message("subset(s) ", paste(ssList, collapse = ", "),
" excluded from outcome regression")
}
}
if (any(tst)) {
ssList <- NULL
# ensure that tx received agree with feasible tx sets
for (i in subsetsModeled) {
# identify tx received
txr <- unique(x = txReceived[ptsSubset == i])
if (any(!{txr %in% subsets[[ i ]]})) ssList <- c(ssList, i)
}
if (!is.null(x = ssList)) {
message("NOTE: subset(s) ", paste(ssList, collapse = ", "),
" received tx not in accordance with specified feasible tx sets")
}
}
return( NULL )
}
setMethod(f = ".checkFSetAndOutcomeModels",
signature = c(txObj = "TxInfoWithSubsets",
moMain = "ModelObjSubset",
moCont = "ModelObjSubset"),
definition = .modelObjSubsetCheckOM)
setMethod(f = ".checkFSetAndOutcomeModels",
signature = c(txObj = "TxInfoWithSubsets",
moMain = "ModelObjSubset",
moCont = "NULL"),
definition = .modelObjSubsetCheckOM)
setMethod(f = ".checkFSetAndOutcomeModels",
signature = c(txObj = "TxInfoWithSubsets",
moMain = "NULL",
moCont = "ModelObjSubset"),
definition = .modelObjSubsetCheckOM)
setMethod(f = ".checkFSetAndOutcomeModels",
signature = c(txObj = "TxInfoWithSubsets",
moMain = "ModelObj_SubsetList",
moCont = "ModelObj_SubsetList"),
definition = .modelObjSubsetCheckOM)
setMethod(f = ".checkFSetAndOutcomeModels",
signature = c(txObj = "TxInfoWithSubsets",
moMain = "ModelObj_SubsetList",
moCont = "NULL"),
definition = .modelObjSubsetCheckOM)
setMethod(f = ".checkFSetAndOutcomeModels",
signature = c(txObj = "TxInfoWithSubsets",
moMain = "NULL",
moCont = "ModelObj_SubsetList"),
definition = .modelObjSubsetCheckOM)
.modelObjCheckOM <- function(txObj, moMain, moCont, ..., data) {
# subsets identified in fSet and its tx options
subsets <- .getSubsets(object = txObj)
# subset to which each patient belongs
ptsSubset <- .getPtsSubset(object = txObj)
# tx received by patients
txReceived <- data[,.getTxName(object = txObj)]
# ensure that if any subsets have only one tx option, pts received only 1 tx
ssList <- NULL
for (i in names(x = subsets)) {
if (length(x = subsets[[ i ]]) == 1L) {
# if 1 feasible tx option, identify tx received
txr <- unique(x = txReceived[ptsSubset == i])
if (length(x = txr) != 1L) {
# if more than 1 tx received stop
stop("patients in subset ", i,
" received tx not in accordance with feasible tx sets;",
" subset must be modeled", call. = FALSE)
} else {
ssList <- c(ssList, i)
}
}
}
if (!is.null(x = ssList)) {
message("NOTE: subset(s) ", paste(ssList, collapse = ", "),
" excluded from outcome regression")
}
return( NULL )
}
setMethod(f = ".checkFSetAndOutcomeModels",
signature = c(txObj = "TxInfoWithSubsets",
moMain = "modelObj",
moCont = "modelObj"),
definition = .modelObjCheckOM)
setMethod(f = ".checkFSetAndOutcomeModels",
signature = c(txObj = "TxInfoWithSubsets",
moMain = "modelObj",
moCont = "NULL"),
definition = .modelObjCheckOM)
setMethod(f = ".checkFSetAndOutcomeModels",
signature = c(txObj = "TxInfoWithSubsets",
moMain = "NULL",
moCont = "modelObj"),
definition = .modelObjCheckOM)
.extractModelNames <- function(modelObj) {
if (is.null(x = modelObj)) return( NULL )
if (is.list(x = modelObj)) {
nms <- names(x = modelObj)
subsetsModeled <- sapply(X = nms,
FUN = function(x) {
unlist(x = strsplit(x = x, split = ","))
})
} else {
subsetsModeled <- unlist(x = strsplit(x = names(x = modelObj), split = ","))
}
return( subsetsModeled )
}
```

**Any scripts or data that you put into this service are public.**

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.