EMCluster: EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution

EM algorithms and several efficient initialization methods for model-based clustering of finite mixture Gaussian distribution with unstructured dispersion in both of unsupervised and semi-supervised learning.

AuthorWei-Chen Chen [aut, cre], Ranjan Maitra [aut], Volodymyr Melnykov [ctb]
Date of publication2016-12-17 22:36:16
MaintainerWei-Chen Chen <wccsnow@gmail.com>
LicenseMozilla Public License 2.0
Version0.2-6
http://maitra.public.iastate.edu/

View on CRAN

Functions

append.BN Man page
assign.class Man page
assign.class.wt Man page
bh.fdr Man page
check.dim Man page
check.dim.wt Man page
class2Gamma Man page
class2Gamma.wt Man page
color.class Man page
col.ppcontour Man page
create.cex Man page
create.colors Man page
da1 Man page
da2 Man page
da3 Man page
dlmvn Man page
dmixmvn Man page
dmixmvn.wt Man page
dmvn Man page
draw.colors Man page
em.aic Man page
em.bic Man page
.EMC Man page
em.clc Man page
emcluster Man page
EMCluster Man page
EMCluster-package Man page
emcluster.wt Man page
.EMControl Man page
.EMC.Rnd Man page
.EMC.Rndp Man page
em.EM Man page
emgroup Man page
emgroup.wt Man page
em.ic Man page
em.icl Man page
em.icl.bic Man page
em.init Man page
em.Model Man page
emobj object Man page
emret class Man page
e.step Man page
e.step.wt Man page
exhaust.EM Man page
fill.ppcontour Man page
fill.ppmu Man page
fill.pppoints Man page
Gamma2class Man page
Gamma2class.wt Man page
GenDataSet Man page
GenMixDataSet Man page
get.cov.logit.PI Man page
get.cov.logit.z Man page
get.cov.param Man page
get.cov.post.z Man page
get.E.chi2 Man page
get.E.delta Man page
getlist Man page
get.logor.stat Man page
Gmat Man page
gridOne Man page
init.EM Man page
Iy Man page
Iy2 Man page
Jaccard.Index Man page
lmt Man page
logL Man page
logL.wt Man page
LTsigma2var Man page
LTSigma2variance Man page
match.colcex Man page
mb.em.EM Man page
mb.rand.EM Man page
meandispersion Man page
m.step Man page
m.step.wt Man page
my.cat Man page
my.format Man page
myiris Man page
my.print Man page
partial.f.mu.s Man page
partial.logit.p Man page
partial.logL Man page
partial.post.z Man page
partial.post.z.1 Man page
partial.q Man page
pchisq.my Man page
plot2d Man page
plotbar Man page
plotBN Man page
plotem Man page
plotlikeprob Man page
plotmd Man page
plotp Man page
plotppcontour Man page
plotpt Man page
plotq Man page
postPI Man page
print.emret Man page
print.initret Man page
print.lmt Man page
print.RRandret Man page
print.summary.emret Man page
print.summary.svd Man page
print.svd Man page
project.on.2d Man page
q.map.new Man page
rand.EM Man page
recode Man page
recolor Man page
rematch Man page
RRand Man page
shortemcluster Man page
shortemcluster.wt Man page
simple.init Man page
starts.via.svd Man page
starts.via.svd.wt Man page
summary.emret Man page
summary.emret.wt Man page
summary.svd Man page
summary.svd.wt Man page
var2LTsigma Man page
variance2LTSigma Man page
w.2 Man page
wt2wot Man page

Files

EMCluster
EMCluster/COPYING
EMCluster/inst
EMCluster/inst/CITATION
EMCluster/inst/doc
EMCluster/inst/doc/EMCluster-guide.Rnw
EMCluster/inst/doc/EMCluster-guide.pdf
EMCluster/inst/workflow
EMCluster/inst/workflow/galaxy
EMCluster/inst/workflow/galaxy/6-qmap.r
EMCluster/inst/workflow/galaxy/3-test.r
EMCluster/inst/workflow/galaxy/2-em.Rnd.r
EMCluster/inst/workflow/galaxy/4-plot.r
EMCluster/inst/workflow/galaxy/0-run.sh
EMCluster/inst/workflow/iris
EMCluster/inst/workflow/iris/6-qmap.r
EMCluster/inst/workflow/iris/3-test.r
EMCluster/inst/workflow/iris/2-em.Rnd.r
EMCluster/inst/workflow/iris/4-plot_pp.r
EMCluster/inst/workflow/iris/5-plot_contour.r
EMCluster/inst/workflow/iris/3-adjR.r
EMCluster/inst/workflow/iris/0-run.sh
EMCluster/inst/workflow/crabs
EMCluster/inst/workflow/crabs/6-qmap.r
EMCluster/inst/workflow/crabs/3-test.r
EMCluster/inst/workflow/crabs/2-em.Rnd.r
EMCluster/inst/workflow/crabs/4-plot_pp.r
EMCluster/inst/workflow/crabs/5-plot_contour.r
EMCluster/inst/workflow/crabs/3-adjR.r
EMCluster/inst/workflow/crabs/0-run.sh
EMCluster/inst/workflow/figure4
EMCluster/inst/workflow/figure4/6-qmap.r
EMCluster/inst/workflow/figure4/3-test.r
EMCluster/inst/workflow/figure4/2-em.Rnd.r
EMCluster/inst/workflow/figure4/4-plot_pp.r
EMCluster/inst/workflow/figure4/5-plot_contour.r
EMCluster/inst/workflow/figure4/3-adjR.r
EMCluster/inst/workflow/figure4/1-simu.r
EMCluster/inst/workflow/figure4/0-run.sh
EMCluster/src
EMCluster/src/hc.c
EMCluster/src/ss_M_emcluster.c
EMCluster/src/R_init_svd.c
EMCluster/src/R_init_other_shortem.c
EMCluster/src/Makevars
EMCluster/src/mb_init.c
EMCluster/src/R_M_emgroup.c
EMCluster/src/unique.c
EMCluster/src/ss_mb_em_EM.c
EMCluster/src/RRand.c
EMCluster/src/it_init_EM.c
EMCluster/src/findzero.c
EMCluster/src/ss_mb_randomEMinit.c
EMCluster/src/ss_mb_init.c
EMCluster/src/meandispersion.c
EMCluster/src/kmeans.c
EMCluster/src/init_svd.c
EMCluster/src/mb_em_EM.c
EMCluster/src/mb_randomEMinit.c
EMCluster/src/array.h
EMCluster/src/it_R_init_EM.c
EMCluster/src/it_tool.h
EMCluster/src/ss_R_emcluster.c
EMCluster/src/order.h
EMCluster/src/ss_labInit.c
EMCluster/src/srswor.c
EMCluster/src/ss_mb_rand_EM.c
EMCluster/src/R_initials.c
EMCluster/src/mb_tool.h
EMCluster/src/M_init_other.c
EMCluster/src/M_emgroup.c
EMCluster/src/R_mstep.c
EMCluster/src/ss_init_other.c
EMCluster/src/mb_rand_EM.c
EMCluster/src/svd.c
EMCluster/src/mat_vec.c
EMCluster/src/R_dlmvnorm.c
EMCluster/src/emgroup.c
EMCluster/src/ss_rand_EM.c
EMCluster/src/sorted.c
EMCluster/src/chisqstat.c
EMCluster/src/hclass.c
EMCluster/src/classify.c
EMCluster/src/R_emcluster.c
EMCluster/src/dlmvnorm.c
EMCluster/src/init_other.c
EMCluster/src/initials.c
EMCluster/src/ss_R_initials.c
EMCluster/src/R_tool.c
EMCluster/src/ss_M_rand_EM.c
EMCluster/src/eigens.c
EMCluster/src/order.c
EMCluster/src/inverse.c
EMCluster/src/R_estep.c
EMCluster/src/emcluster.c
EMCluster/src/mat_vec.h
EMCluster/src/ss_mb_tool.h
EMCluster/src/rand_EM.c
EMCluster/src/R_RRand.c
EMCluster/src/quantile.c
EMCluster/src/it_R_emptr.c
EMCluster/src/ss_emcluster.c
EMCluster/src/M_emcluster.c
EMCluster/src/mb_tool.c
EMCluster/src/prcomp.c
EMCluster/src/quantile.h
EMCluster/src/ss_initials.c
EMCluster/src/hclassify.c
EMCluster/NAMESPACE
EMCluster/demo
EMCluster/demo/shortem.r
EMCluster/demo/myiris.r
EMCluster/demo/RRand.r
EMCluster/demo/emcluster.r
EMCluster/demo/ppcontour.r
EMCluster/demo/lmt.r
EMCluster/demo/starts_via_svd.r
EMCluster/demo/00Index
EMCluster/demo/logit.r
EMCluster/demo/allinit_ss.r
EMCluster/demo/allinit.r
EMCluster/demo/emstep.r
EMCluster/INSTALL
EMCluster/data
EMCluster/data/da1.rda
EMCluster/data/color.ppcontour.r
EMCluster/data/EMC.rda
EMCluster/data/color.r
EMCluster/data/da3.rda
EMCluster/data/da2.rda
EMCluster/R
EMCluster/R/recolor.r
EMCluster/R/fcn_init_EM.r
EMCluster/R/partial_q.r
EMCluster/R/fcn_dlmvnorm.r
EMCluster/R/000_globalVariables.r
EMCluster/R/fcn_emgroup.r
EMCluster/R/00_control.r
EMCluster/R/lmt_project_to_2d.r
EMCluster/R/01_simple.r
EMCluster/R/fcn_ic.r
EMCluster/R/partial_logL.r
EMCluster/R/fcn_e_step.r
EMCluster/R/fcn_Jaccard.r
EMCluster/R/fcn_emcluster.r
EMCluster/R/fcn_boost_plot2d.r
EMCluster/R/fcn_summary.r
EMCluster/R/lmt_information.r
EMCluster/R/fcn_init_other_shortem.r
EMCluster/R/fcn_mytool.r
EMCluster/R/fcn_init_svd.r
EMCluster/R/lmt_q.map.new.r
EMCluster/R/zzz.r
EMCluster/R/fcn_plot.r
EMCluster/R/lmt_main.r
EMCluster/R/logit_PI_I_information.r
EMCluster/R/fcn_m_step.r
EMCluster/R/lmt_libControurPlotNew.r
EMCluster/R/post_I_information.r
EMCluster/R/fcn_boost_tools.r
EMCluster/R/fcn_RRand.r
EMCluster/R/fcn_initials.r
EMCluster/R/fcn_boost_plotdens.r
EMCluster/vignettes
EMCluster/vignettes/EMCluster-guide.Rnw
EMCluster/vignettes/EMCluster-include
EMCluster/vignettes/EMCluster-include/03-example.tex
EMCluster/vignettes/EMCluster-include/EMCluster.bib
EMCluster/vignettes/EMCluster-include/00-preamble.tex
EMCluster/vignettes/EMCluster-include/01-acknowledgement.tex
EMCluster/vignettes/EMCluster-include/00-defs.tex
EMCluster/vignettes/EMCluster-include/allinit.pdf
EMCluster/vignettes/EMCluster-include/01-introduction.tex
EMCluster/vignettes/EMCluster-include/02-em_init.tex
EMCluster/vignettes/EMCluster-include/my_jss.cls
EMCluster/vignettes/EMCluster-include/allinit_ss.pdf
EMCluster/vignettes/build_pdf.sh
EMCluster/README.md
EMCluster/MD5
EMCluster/DESCRIPTION
EMCluster/ChangeLog
EMCluster/man
EMCluster/man/a1_plotppcontour.Rd EMCluster/man/22_emcluster.Rd EMCluster/man/92_convert.Rd EMCluster/man/xx_RRand.Rd EMCluster/man/a0_project.on.2d.Rd EMCluster/man/zx_all.post_I_information.Rd EMCluster/man/xx_recolor.Rd EMCluster/man/32_em.step.Rd EMCluster/man/30_assign.class.Rd EMCluster/man/00_EMCluster-package.Rd EMCluster/man/99_plotmd.Rd EMCluster/man/31_em.ic.Rd EMCluster/man/zy_all.lmt.Rd EMCluster/man/xx_Jaccard.Rd EMCluster/man/zz_all.internal.Rd EMCluster/man/91_mvn.Rd EMCluster/man/21_init.EM.Rd EMCluster/man/23_emgroup.Rd EMCluster/man/40_lmt.Rd EMCluster/man/yy_print.summary.Rd EMCluster/man/99_plotem.Rd EMCluster/man/11_d.EMControl.Rd EMCluster/man/12_d.dataset.Rd
EMCluster/cleanup

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