EMCluster: EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution
Version 0.2-7

EM algorithms and several efficient initialization methods for model-based clustering of finite mixture Gaussian distribution with unstructured dispersion in both of unsupervised and semi-supervised learning.

AuthorWei-Chen Chen [aut, cre], Ranjan Maitra [aut], Volodymyr Melnykov [ctb]
Date of publication2017-04-28 07:23:36 UTC
MaintainerWei-Chen Chen <wccsnow@gmail.com>
LicenseMozilla Public License 2.0
Version0.2-7
URL https://github.com/snoweye/EMCluster
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("EMCluster")

Getting started

README.md

Popular man pages

00_EMCluster-package: EM Algorithm for Model-Based Clustering of Finite Mixture...
21_init.EM: Initialization and EM Algorithm
22_emcluster: EM Algorithm for model-based clustering
30_assign.class: Assign Class Id
92_convert: Convert Matrices in Different Format
99_plotem: Plot Two Dimensional Data with clusters
99_plotmd: Plot Multivariate Data
See all...

All man pages Function index File listing

Man pages

00_EMCluster-package: EM Algorithm for Model-Based Clustering of Finite Mixture...
11_d.EMControl: EM Control Generator and Controller
12_d.dataset: Dataset for demonstrations
21_init.EM: Initialization and EM Algorithm
22_emcluster: EM Algorithm for model-based clustering
23_emgroup: Other Initializations
30_assign.class: Assign Class Id
31_em.ic: Information Criteria for Model-Based Clustering
32_em.step: Single E- and M-step
40_lmt: Likelihood Mixture Tests
91_mvn: Density of (Mixture) Multivariate Normal Distribution
92_convert: Convert Matrices in Different Format
99_plotem: Plot Two Dimensional Data with clusters
99_plotmd: Plot Multivariate Data
a0_project.on.2d: Produce Projection on 2D
a1_plotppcontour: Plot Contour
xx_Jaccard: Jaccard Index
xx_recolor: Recolor Classification IDs
xx_RRand: Rand Index and Adjusted Rand Index
yy_print.summary: Functions for Printing or Summarizing Objects According to...
zx_all.post_I_information: Post I Information Functions of EMCluster
zy_all.lmt: Likelihood Mixture Test (LMT) Functions of EMCluster
zz_all.internal: All Internal Functions of EMCluster

Functions

Files

COPYING
inst
inst/CITATION
inst/doc
inst/doc/EMCluster-guide.Rnw
inst/doc/EMCluster-guide.pdf
inst/workflow
inst/workflow/galaxy
inst/workflow/galaxy/6-qmap.r
inst/workflow/galaxy/3-test.r
inst/workflow/galaxy/2-em.Rnd.r
inst/workflow/galaxy/4-plot.r
inst/workflow/galaxy/0-run.sh
inst/workflow/iris
inst/workflow/iris/6-qmap.r
inst/workflow/iris/3-test.r
inst/workflow/iris/2-em.Rnd.r
inst/workflow/iris/4-plot_pp.r
inst/workflow/iris/5-plot_contour.r
inst/workflow/iris/3-adjR.r
inst/workflow/iris/0-run.sh
inst/workflow/crabs
inst/workflow/crabs/6-qmap.r
inst/workflow/crabs/3-test.r
inst/workflow/crabs/2-em.Rnd.r
inst/workflow/crabs/4-plot_pp.r
inst/workflow/crabs/5-plot_contour.r
inst/workflow/crabs/3-adjR.r
inst/workflow/crabs/0-run.sh
inst/workflow/figure4
inst/workflow/figure4/6-qmap.r
inst/workflow/figure4/3-test.r
inst/workflow/figure4/2-em.Rnd.r
inst/workflow/figure4/4-plot_pp.r
inst/workflow/figure4/5-plot_contour.r
inst/workflow/figure4/3-adjR.r
inst/workflow/figure4/1-simu.r
inst/workflow/figure4/0-run.sh
src
src/hc.c
src/ss_M_emcluster.c
src/R_init_svd.c
src/R_init_other_shortem.c
src/Makevars
src/mb_init.c
src/R_M_emgroup.c
src/unique.c
src/ss_mb_em_EM.c
src/RRand.c
src/it_init_EM.c
src/findzero.c
src/ss_mb_randomEMinit.c
src/ss_mb_init.c
src/meandispersion.c
src/kmeans.c
src/init_svd.c
src/mb_em_EM.c
src/mb_randomEMinit.c
src/array.h
src/it_R_init_EM.c
src/it_tool.h
src/ss_R_emcluster.c
src/order.h
src/ss_labInit.c
src/srswor.c
src/ss_mb_rand_EM.c
src/R_initials.c
src/mb_tool.h
src/M_init_other.c
src/M_emgroup.c
src/R_mstep.c
src/ss_init_other.c
src/mb_rand_EM.c
src/svd.c
src/mat_vec.c
src/zzz.c
src/R_dlmvnorm.c
src/emgroup.c
src/ss_rand_EM.c
src/sorted.c
src/chisqstat.c
src/hclass.c
src/classify.c
src/R_emcluster.c
src/dlmvnorm.c
src/init_other.c
src/initials.c
src/ss_R_initials.c
src/R_tool.c
src/ss_M_rand_EM.c
src/eigens.c
src/order.c
src/inverse.c
src/R_estep.c
src/emcluster.c
src/mat_vec.h
src/ss_mb_tool.h
src/zzz.h
src/rand_EM.c
src/R_RRand.c
src/quantile.c
src/it_R_emptr.c
src/ss_emcluster.c
src/M_emcluster.c
src/mb_tool.c
src/prcomp.c
src/quantile.h
src/ss_initials.c
src/hclassify.c
NAMESPACE
demo
demo/shortem.r
demo/myiris.r
demo/RRand.r
demo/emcluster.r
demo/ppcontour.r
demo/lmt.r
demo/starts_via_svd.r
demo/00Index
demo/logit.r
demo/allinit_ss.r
demo/allinit.r
demo/emstep.r
INSTALL
data
data/da1.rda
data/color.ppcontour.r
data/EMC.rda
data/color.r
data/da3.rda
data/da2.rda
R
R/recolor.r
R/fcn_init_EM.r
R/partial_q.r
R/fcn_dlmvnorm.r
R/000_globalVariables.r
R/fcn_emgroup.r
R/00_control.r
R/lmt_project_to_2d.r
R/01_simple.r
R/fcn_ic.r
R/partial_logL.r
R/fcn_e_step.r
R/fcn_Jaccard.r
R/fcn_emcluster.r
R/fcn_boost_plot2d.r
R/fcn_summary.r
R/lmt_information.r
R/fcn_init_other_shortem.r
R/fcn_mytool.r
R/fcn_init_svd.r
R/lmt_q.map.new.r
R/zzz.r
R/fcn_plot.r
R/lmt_main.r
R/logit_PI_I_information.r
R/fcn_m_step.r
R/lmt_libControurPlotNew.r
R/post_I_information.r
R/fcn_boost_tools.r
R/fcn_RRand.r
R/fcn_initials.r
R/fcn_boost_plotdens.r
vignettes
vignettes/EMCluster-guide.Rnw
vignettes/EMCluster-include
vignettes/EMCluster-include/03-example.tex
vignettes/EMCluster-include/EMCluster.bib
vignettes/EMCluster-include/00-preamble.tex
vignettes/EMCluster-include/01-acknowledgement.tex
vignettes/EMCluster-include/00-defs.tex
vignettes/EMCluster-include/allinit.pdf
vignettes/EMCluster-include/01-introduction.tex
vignettes/EMCluster-include/02-em_init.tex
vignettes/EMCluster-include/my_jss.cls
vignettes/EMCluster-include/allinit_ss.pdf
vignettes/build_pdf.sh
README.md
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/a1_plotppcontour.Rd
man/22_emcluster.Rd
man/92_convert.Rd
man/xx_RRand.Rd
man/a0_project.on.2d.Rd
man/zx_all.post_I_information.Rd
man/xx_recolor.Rd
man/32_em.step.Rd
man/30_assign.class.Rd
man/00_EMCluster-package.Rd
man/99_plotmd.Rd
man/31_em.ic.Rd
man/zy_all.lmt.Rd
man/xx_Jaccard.Rd
man/zz_all.internal.Rd
man/91_mvn.Rd
man/21_init.EM.Rd
man/23_emgroup.Rd
man/40_lmt.Rd
man/yy_print.summary.Rd
man/99_plotem.Rd
man/11_d.EMControl.Rd
man/12_d.dataset.Rd
cleanup
EMCluster documentation built on May 19, 2017, 8:22 p.m.

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