MSTCoords: Add MST-style embedding coordinates to the map

In EmbedSOM: Fast Embedding Guided by Self-Organizing Map

Add MST-style embedding coordinates to the map

Description

Add MST-style embedding coordinates to the map

Usage

MSTCoords(
  dim = NULL,
  dist.method = NULL,
  distFn = function(x) x,
  layoutFn = igraph::layout_with_kk
)

Arguments

dim	Dimension of the result (passed to layoutFn)
dist.method	The method to compute distances, passed to stats::dist() as parameter method
distFn	Custom transformation function of the distance matrix
layoutFn	iGraph-compatible graph layouting function (default igraph::layout_with_kk())

Value

a function that transforms the map, usable as coordsFn parameter

EmbedSOM documentation built on July 5, 2022, 5:14 p.m.