uwotCoords: Add UMAP-based coordinates to a map, using the 'uwot' package

In EmbedSOM: Fast Embedding Guided by Self-Organizing Map

Add UMAP-based coordinates to a map, using the 'uwot' package

Description

Add UMAP-based coordinates to a map, using the 'uwot' package

Usage

uwotCoords(dim = NULL, uwotFn = uwot::umap, ...)

Arguments

dim	Dimension of the result (passed to uwotFn as dims)
uwotFn	UMAP function to run (default uwot::umap)
...	passed to uwotFn

Value

a function that transforms the map, usable as coordsFn parameter

EmbedSOM documentation built on July 5, 2022, 5:14 p.m.