API for EpiModel
Mathematical Modeling of Infectious Disease Dynamics
| Global functions | |
|---|---|
| EpiModel | Man page |
| EpiModel-package | Man page |
| InitErgmTerm.absdiffby | Man page Source code |
| InitErgmTerm.absdiffnodemix | Man page Source code |
| InitErgmTerm.fuzzynodematch | Man page Source code |
| absdiffby | Man page |
| absdiffnodemix | Man page |
| add_attr | Man page Source code |
| add_control | Man page Source code |
| add_epi | Man page Source code |
| add_init | Man page Source code |
| add_param | Man page Source code |
| add_vertices | Man page Source code |
| append_attr | Man page Source code |
| append_core_attr | Man page Source code |
| apportion_lr | Man page Source code |
| arrivals.2g.net | Man page Source code |
| arrivals.icm | Man page Source code |
| arrivals.icm.bip | Man page Source code |
| arrivals.net | Man page Source code |
| arrive_nodes | Man page Source code |
| as.data.frame.dcm | Man page Source code |
| as.data.frame.icm | Man page Source code |
| as.data.frame.netdx | Man page Source code |
| as.data.frame.netsim | Man page Source code |
| as.epi.data.frame | Man page Source code |
| as.network.transmat | Man page Source code |
| as.phylo.transmat | Man page Source code |
| as_cumulative_edgelist | Man page Source code |
| as_cumulative_edgelist.networkDynamic | Source code |
| as_param.df_type | Source code |
| as_tibble_edgelist | Man page Source code |
| assert_valid_posit_ids | Source code |
| assert_valid_time_steps | Source code |
| auto_update_attr | Man page Source code |
| brewer_ramp | Man page Source code |
| check_attr_lengths | Man page Source code |
| check_degdist_bal | Man page Source code |
| check_end_horizon_control | Man page Source code |
| check_params_flat | Source code |
| check_params_names | Source code |
| check_scenarios_df | Source code |
| color_tea | Man page Source code |
| common_updater | Man page Source code |
| comp_plot | Man page Source code |
| comp_plot.dcm | Man page Source code |
| comp_plot.icm | Man page Source code |
| comp_plot.netsim | Man page Source code |
| control.dcm | Man page Source code |
| control.icm | Man page Source code |
| control.net | Man page Source code |
| copy_datattr_to_nwattr | Man page Source code |
| copy_nwattr_to_datattr | Man page Source code |
| create_dat_object | Man page Source code |
| create_scenario_list | Man page Source code |
| crosscheck.dcm | Man page Source code |
| crosscheck.icm | Man page Source code |
| crosscheck.net | Man page Source code |
| dcm | Man page Source code |
| dcm.mods | Man page |
| dedup_cumulative_edgelist | Man page Source code |
| delete_attr | Man page Source code |
| delete_edges | Man page Source code |
| delete_vertices | Man page Source code |
| denom | Source code |
| depart_nodes | Man page Source code |
| departures.2g.net | Man page Source code |
| departures.icm | Man page Source code |
| departures.icm.bip | Man page Source code |
| departures.net | Man page Source code |
| df2epi | Source code |
| discord_edgelist | Man page Source code |
| dissolution_coefs | Man page Source code |
| draw_means | Source code |
| draw_qnts | Source code |
| edgelist_censor | Man page Source code |
| edges_correct | Man page Source code |
| empty_el_cuml | Source code |
| epi_trackers | Man page Source code |
| epiweb | Man page Source code |
| ess | Source code |
| flatten_params | Source code |
| format_param | Man page Source code |
| fuzzynodematch | Man page |
| generate_random_params | Man page Source code |
| geom_bands | Man page Source code |
| get_adj_list | Man page Source code |
| get_args | Man page Source code |
| get_attr | Man page Source code |
| get_attr_history | Man page Source code |
| get_attr_list | Man page Source code |
| get_attr_prop | Man page Source code |
| get_backward_reachable | Man page Source code |
| get_connected_nodes | Man page Source code |
| get_control | Man page Source code |
| get_control_list | Man page Source code |
| get_cumulative_degree | Man page Source code |
| get_cumulative_edgelist | Man page Source code |
| get_cumulative_edgelists_df | Man page Source code |
| get_current_timestep | Man page Source code |
| get_degree | Man page Source code |
| get_discordant_edgelist | Man page Source code |
| get_edgelist | Man page Source code |
| get_edgelists_df | Man page Source code |
| get_epi | Man page Source code |
| get_epi_list | Man page Source code |
| get_formula_term_attr | Man page Source code |
| get_forward_reachable | Man page Source code |
| get_init | Man page Source code |
| get_init_list | Man page Source code |
| get_means | Source code |
| get_modules | Man page Source code |
| get_network | Man page Source code |
| get_network.netdx | Man page Source code |
| get_network.netsim | Man page Source code |
| get_network.netsim_dat | Man page Source code |
| get_network_attributes | Man page Source code |
| get_network_control | Man page Source code |
| get_network_term_attr | Man page Source code |
| get_nwparam | Man page Source code |
| get_nwstats | Man page Source code |
| get_param | Man page Source code |
| get_param_list | Man page Source code |
| get_param_set | Man page Source code |
| get_partners | Man page Source code |
| get_posit_ids | Man page Source code |
| get_qnts | Source code |
| get_raw_elcuml | Source code |
| get_sims | Man page Source code |
| get_subnet_adj_list | Man page Source code |
| get_transmat | Man page Source code |
| get_unique_ids | Man page Source code |
| get_vertex_attribute | Man page Source code |
| harrow | Source code |
| icm | Man page Source code |
| idgroup | Man page Source code |
| increment_timestep | Man page Source code |
| infection.2g.net | Man page Source code |
| infection.icm | Man page Source code |
| infection.icm.bip | Man page Source code |
| infection.net | Man page Source code |
| init.dcm | Man page Source code |
| init.icm | Man page Source code |
| init.net | Man page Source code |
| init_nets | Man page Source code |
| init_status.icm | Man page Source code |
| init_status.net | Man page Source code |
| initialize.icm | Man page Source code |
| initialize.net | Man page Source code |
| input_updater | Source code |
| is.transmat | Man page Source code |
| is_active_posit_ids | Man page Source code |
| is_active_unique_ids | Man page Source code |
| list_param.df_types | Source code |
| list_special_params | Source code |
| make_module_list | Man page Source code |
| make_scenario | Source code |
| make_stats_table | Man page Source code |
| mbox | Source code |
| mcat | Man page Source code |
| merge.icm | Man page Source code |
| merge.netsim | Man page Source code |
| mod_SIR_1g_cl | Man page Source code |
| mod_SIR_1g_op | Man page Source code |
| mod_SIR_2g_cl | Man page Source code |
| mod_SIR_2g_op | Man page Source code |
| mod_SIS_1g_cl | Man page Source code |
| mod_SIS_1g_op | Man page Source code |
| mod_SIS_2g_cl | Man page Source code |
| mod_SIS_2g_op | Man page Source code |
| mod_SI_1g_cl | Man page Source code |
| mod_SI_1g_op | Man page Source code |
| mod_SI_2g_cl | Man page Source code |
| mod_SI_2g_op | Man page Source code |
| modules.icm | Man page |
| modules.net | Man page |
| multilayer | Man page Source code |
| mutate_epi | Man page Source code |
| name_saveout_elts | Source code |
| net-accessor | Man page |
| netdx | Man page Source code |
| netest | Man page Source code |
| netsim | Man page Source code |
| netsim_clear_checkpoint | Source code |
| netsim_cond_msg | Man page Source code |
| netsim_error_logger | Man page Source code |
| netsim_get_checkpoint_filename | Source code |
| netsim_initialize | Source code |
| netsim_is_checkpointed | Source code |
| netsim_is_resume_checkpoint | Source code |
| netsim_load_checkpoint | Source code |
| netsim_run | Source code |
| netsim_run_modules | Source code |
| netsim_run_nsteps | Source code |
| netsim_save_checkpoint | Source code |
| netsim_validate_control | Source code |
| network_initialize | Man page Source code |
| nwupdate.net | Man page Source code |
| overwrite_attrs | Man page Source code |
| padded_vector | Man page Source code |
| param.dcm | Man page Source code |
| param.df_type | Source code |
| param.icm | Man page Source code |
| param.net | Man page Source code |
| param.net_from_table | Man page Source code |
| param.net_to_table | Man page Source code |
| param_random | Man page Source code |
| plot.dcm | Man page Source code |
| plot.epi.data.frame | Man page Source code |
| plot.icm | Man page Source code |
| plot.netdx | Man page Source code |
| plot.netsim | Man page Source code |
| plot.transmat | Man page Source code |
| plot_netsim_epi | Source code |
| plot_netsim_network | Source code |
| plot_netsim_stats | Source code |
| plot_stats_table | Source code |
| prevalence.icm | Man page Source code |
| prevalence.icm.bip | Man page Source code |
| prevalence.net | Man page Source code |
| print.control.dcm | Source code |
| print.control.icm | Source code |
| print.control.net | Source code |
| print.dcm | Source code |
| print.disscoef | Source code |
| print.icm | Source code |
| print.init.dcm | Source code |
| print.init.icm | Source code |
| print.init.net | Source code |
| print.netdx | Man page Source code |
| print.netest | Source code |
| print.netsim | Source code |
| print.param.dcm | Source code |
| print.param.icm | Source code |
| print.param.net | Source code |
| print_nwstats_table | Man page Source code |
| process_out.net | Man page Source code |
| raw_get_attr_list | Source code |
| raw_set_attr | Source code |
| raw_set_attr_list | Source code |
| reachable-nodes | Man page |
| record_attr_history | Man page Source code |
| record_raw_object | Man page Source code |
| recovery.2g.net | Man page Source code |
| recovery.icm | Man page Source code |
| recovery.icm.bip | Man page Source code |
| recovery.net | Man page Source code |
| remove_modules | Man page Source code |
| remove_node_attr | Man page Source code |
| remove_special_params | Source code |
| resim_nets | Man page Source code |
| saveout.dcm | Man page Source code |
| saveout.icm | Man page Source code |
| saveout.net | Man page Source code |
| set_attr | Man page Source code |
| set_control | Man page Source code |
| set_current_timestep | Man page Source code |
| set_epi | Man page Source code |
| set_init | Man page Source code |
| set_modules | Man page Source code |
| set_network | Man page Source code |
| set_network.netsim_dat | Man page Source code |
| set_param | Man page Source code |
| set_raw_elcuml | Source code |
| set_transmat | Man page Source code |
| set_vertex_attribute | Man page Source code |
| shiftVec | Source code |
| sim_nets_t1 | Man page Source code |
| simulate_dat | Man page Source code |
| ssample | Man page Source code |
| summary.dcm | Man page Source code |
| summary.icm | Man page Source code |
| summary.netest | Man page Source code |
| summary.netsim | Man page Source code |
| summary_nets | Man page Source code |
| tedgelist_to_toggles | Man page Source code |
| test_icm | Man page Source code |
| test_net | Man page Source code |
| tm_transsmissionTree_plot | Source code |
| toggles_to_diss_stats | Man page Source code |
| transmat | Man page |
| trigger_end_horizon | Man page Source code |
| trim_netest | Man page Source code |
| truncate_sim | Man page Source code |
| unflatten_params | Source code |
| unique_id-tools | Man page |
| update_cumulative_edgelist | Man page Source code |
| update_dissolution | Man page |
| update_list | Man page Source code |
| update_params | Man page Source code |
| update_sim_num | Source code |
| update_unique_ids | Man page Source code |
| use_scenario | Man page Source code |
| validate_run | Source code |
| varrow | Source code |
| verbose.dcm | Man page Source code |
| verbose.icm | Man page Source code |
| verbose.net | Man page Source code |
