FishResp: Analytical Tool for Aquatic Respirometry

Calculates metabolic rate of fish and other aquatic organisms measured using an intermittent-flow respirometry approach. The tool is used to run a set of graphical QC tests of raw respirometry data, correct it for background respiration and chamber effect, filter and extract target values of absolute and mass-specific metabolic rate. Experimental design should include background respiration tests and measuring of one or more metabolic rate traits. The R package is ideally integrated with the pump controller 'PumpResp' and the DO meter 'SensResp' (open-source hardware by FishResp). Raw respirometry data can be also imported from 'AquaResp' (free software), 'AutoResp' ('LoligoSystems'), 'OxyView' ('PreSens'), 'Pyro Oxygen Logger' ('PyroScience') and 'Q-box Aqua' ('QubitSystems'). More information about the R package 'FishResp'is available in the publication by Morozov et al. (2019) <doi:10.1093/conphys/coz003>.

Getting started

Package details

AuthorSergey Morozov [aut, cre], Scott McCairns [aut, ths], Juha Merila [ths], Federico Calboli [ctb], Jenni Prokkola [dtc], Stephen White [dtc], Daniel Montgomery [dtc], Laura Almodovar-Acevedo [dtc], Niclas Kolm [dtc], Alexander Kotrschal [dtc], Erik Gill [dtc]
MaintainerSergey Morozov <sergey.morozov@helsinki.fi>
LicenseGPL-3
Version1.1.0
URL https://fishresp.org
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("FishResp")

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FishResp documentation built on May 12, 2021, 1:06 a.m.