QC.meas: Quality Control of Raw Data

In FishResp: Analytical Tool for Aquatic Respirometry

Quality Control of Raw Data

Description

Graphical quality control tests of temperature and oxygen raw data before and after correction for background respiration

Usage

QC.meas(clean.data,
        QC = c("Temperature",
               "Total.O2.phases",
               "Corrected.O2.phases",
               "Total.O2.chambers",
               "Corrected.O2.chambers"))

Arguments

clean.data

a data frame obtained by using the function correct.meas

QC

string: the name of a visual QC test. Five options are available: "Temperature": a graph of temperature vs. time ordered by chambers "Total.O2.chambers": a graph of dissolved oxygen vs. time ordered by chambers "Total.O2.phases": a graph of dissolved oxygen vs. time ordered by chambers and phases "Corrected.O2.chambers": a graph of dissolved oxygen corrected for background respiration vs. time ordered by chambers "Corrected.O2.phases": a graph of dissolved oxygen corrected for background respiration vs. time ordered by chambers and phases

Examples

## Not run: 
# if the data have been already loaded to R,
# skip the first line of the code:
data(SMR.clean)

QC.meas(SMR.clean, "Temperature")
QC.meas(SMR.clean, "Total.O2.phases")
QC.meas(SMR.clean, "Corrected.O2.phases")
QC.meas(SMR.clean, "Total.O2.chambers")
QC.meas(SMR.clean, "Corrected.O2.chambers")

## End(Not run)

FishResp documentation built on April 3, 2025, 8:39 p.m.