plot.stMCA: Plots 'standardized' MCA results

View source: R/plot.stMCA.R

plot.stMCAR Documentation

Plots 'standardized' MCA results

Description

Plots a 'standardized' Multiple Correspondence Analysis (resulting from stMCA function), i.e. the clouds of individuals or categories.

Usage

## S3 method for class 'stMCA'
plot(x, type = "v", axes = 1:2, points = "all", threshold = 2.58, groups=NULL, 
                            col = "dodgerblue4", app = 0, ...)

Arguments

x

object of class 'stMCA'

type

character string: 'v' to plot the categories (default), 'i' to plot individuals' points, 'inames' to plot individuals' names

axes

numeric vector of length 2, specifying the components (axes) to plot (c(1,2) is default)

points

character string. If 'all' all points are plotted (default); if 'besth' only those who are the most correlated to horizontal axis are plotted; if 'bestv' only those who are the most correlated to vertical axis are plotted; if 'best' only those who are the most coorelated to horizontal or vertical axis are plotted.

threshold

numeric value. V-test minimal value for the selection of plotted categories.

groups

only if x$call$input.mca = 'multiMCA', i.e. if the MCA standardized to x object was a multiMCA object. Numeric vector specifying the groups of categories to plot. By default, every groups of categories will be plotted

col

color for the points of the individuals or for the labels of the categories (default is 'dodgerblue4')

app

numerical value. If 0 (default), only the labels of the categories are plotted and their size is constant; if 1, only the labels are plotted and their size is proportional to the weights of the categories; if 2, points (triangles) and labels are plotted, and points size is proportional to the weight of the categories.

...

further arguments passed to or from other methods, such as cex, cex.main, ...

Details

A category is considered to be one of the most correlated to a given axis if its test-value is higher then 2.58 (which corresponds to a 0.05 threshold).

Author(s)

Nicolas Robette

References

Robette, Bry and Roueff, 2014, "Un dialogue de sourds dans le theatre statistique? Analyse geometrique des donnees et effets de structure", forthcoming

See Also

stMCA, textvarsup, conc.ellipse

Examples

## Performs a standardized MCA on 'Music' example data set
## ignoring every 'NA' (i.e. 'not available') categories 
## and controlling for age,
## and then draws the cloud of categories.
data(Music)
mca <- speMCA(Music[,1:5],excl=c(3,6,9,12,15))
stmca <- stMCA(mca,control=list(Music$Age))
plot(stmca)
plot(stmca,axes=c(2,3),points='best',col='darkred',app=1)

GDAtools documentation built on March 18, 2022, 5:13 p.m.