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# SVN revision:
# Date of last change: 2017-08-24
# Last changed by: csweetland
#
# Original author: ccampbell
# Copyright Activinsights, Cambridge UK 2013-2017
###############################################################################
context("change duration")
###############################################################################
test_that("changeTimes", {
d1 <- c(54, 30, 27, 53, 100, 204, 197)
d2 <- c(67, 64, 70, 79, 69, 60, 54)
c1 <- cpt.var(d1, penalty = "SIC", pen.value = 1e-3, method = "PELT")
c2 <- cpt.var(d2, penalty = "SIC", pen.value = 1e-3, method = "PELT")
cd1 <- changeTimes(time = 0:6, intervalseconds = 30,
changeupdown = c1, changedegrees = c2)
expect_that(cd1, equals(c(0, 6)))
cd2 <- changeTimes(time = 0:6, intervalseconds = 1,
changeupdown = c1, changedegrees = c2, verbose = FALSE)
expect_that(cd2, equals(c(0, 1, 6)))
df3 <- read.csv(file.path(system.file(package = "GENEAclassify"),
"testdata", "leftcal2.csv"))
c13 <- cpt.var(df3$UpDown, penalty = "SIC", pen.value = 1e-3, method = "PELT")
c23 <- cpt.var(df3$Degrees, penalty = "SIC", pen.value = 1e-3, method = "PELT")
cd3 <- changeTimes(time = df3$Time, intervalseconds = 30, changeupdown = c13, changedegrees = c23)
expect_that(cd3, equals(c(1390127160.5, 1390127351.5)))
cd4 <- changeTimes(time = df3$Time, intervalseconds = 0, changeupdown = c13, changedegrees = c23, verbose = FALSE)
expect_that(cd4, equals(c(1390127160.5, 1390127186.5, 1390127187.5,
1390127217.5, 1390127249.5, 1390127280.5,
1390127281.5, 1390127314.5, 1390127351.5)))
load(file.path(system.file(package = "GENEAclassify"), "testdata",
"changeDur_chun02rs2.RData"))
cd5 <- changeTimes(time = Time, intervalseconds = intervalSeconds,
changeupdown = changeUpDown, changedegrees = changeDegrees)
expect_that(cd5, equals(c(1356836220.5, 1356837048.5, 1356837172.5,
1356837260.5, 1356837827.5, 1356838402.5,
1356839033.5, 1356839067.5, 1356839289.5,
1356839380.5, 1356839422.5, 1356839807.5,
1356839819.5)))
rm(list = c("d1", "d2", "c1", "c2", "cd2", "df3", "c13", "c23", "cd4"))
})
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