GMD: Generalized Minimum Distance of distributions

GMD is a package for non-parametric distance measurement between two discrete frequency distributions.

AuthorXiaobei Zhao [aut, cre, cph], Albin Sandelin [aut]
Date of publication2016-12-27 15:28:19
MaintainerXiaobei Zhao <xiaobei@binf.ku.dk>
LicenseGPL (>= 2)
Version0.3.3
http://CRAN.R-project.org/package=GMD

View on CRAN

Functions

as.ghist Man page
as.mhist Man page
bedgraph.to.depth Man page
cage Man page
cagel Man page
chipseq Man page
chipseq_hCD4T Man page
chipseq_mES Man page
css Man page
css.hclust Man page
elbow Man page
elbow.batch Man page
equalize.list Man page
gbreaks Man page
gdist Man page
get.sep Man page
ghist Man page
GMD Man page
gmdm Man page
gmdm2dist Man page
gmdm_dist Man page
gmdp Man page
GMD-package Man page
heatmap.3 Man page
is.dist Man page
is.ghist Man page
is.mhist Man page
legend Man page
mhist Man page
mhist2matrix Man page
mhist.summary Man page
plot.elbow Man page
plot.gmdm Man page
plot.gmdp Man page
plot.mhist Man page
plot.mhist.summary Man page
print.gmdm Man page
print.gmdp Man page
summary.gmdp Man page
ts2df Man page

Files

GMD
GMD/inst
GMD/inst/CITATION
GMD/inst/tests
GMD/inst/tests/GMD-demo.R
GMD/inst/extdata
GMD/inst/extdata/hg19
GMD/inst/extdata/hg19/H3K36me3.BedGraph.gz
GMD/inst/extdata/hg19/H3K27me3.BedGraph.gz
GMD/inst/extdata/hg19/H3K9me3.BedGraph.gz
GMD/inst/extdata/hg19/H3K4me2.BedGraph.gz
GMD/inst/extdata/hg19/H3K4me1.BedGraph.gz
GMD/inst/extdata/hg19/H3K4me3.BedGraph.gz
GMD/inst/doc
GMD/inst/doc/GMD-data-processing.Rnw
GMD/inst/doc/GMD-vignette.pdf
GMD/inst/doc/GMD-vignette.Rnw
GMD/inst/doc/GMD-data-processing.pdf
GMD/inst/doc/GMD-vignette.R
GMD/inst/doc/GMD-data-processing.R
GMD/src
GMD/src/base.h
GMD/src/gmd.h
GMD/src/gmd.c
GMD/NAMESPACE
GMD/demo
GMD/demo/00Index
GMD/demo/GMD-demo.R
GMD/NEWS
GMD/data
GMD/data/cage.RData
GMD/data/chipseq_hCD4T.RData
GMD/data/chipseq_mES.RData
GMD/data/cagel.RData
GMD/R
GMD/R/GMD-data.R GMD/R/ghist.R GMD/R/heatmap3.R GMD/R/GMD-package.R GMD/R/css.R GMD/R/GMD-internal.R GMD/R/gmdp.R GMD/R/util.R GMD/R/gdist.R GMD/R/gmdm.R GMD/R/imports.R
GMD/vignettes
GMD/vignettes/GMD-data-processing.Rnw
GMD/vignettes/bioinfo.sty
GMD/vignettes/fig
GMD/vignettes/fig/GMD-fig-case-nottem-01.pdf
GMD/vignettes/fig/GMD-fig-example-ghist-02.pdf
GMD/vignettes/fig/GMD-fig-example-ghist-01b.pdf
GMD/vignettes/fig/GMD-fig-example-GMD-01.pdf
GMD/vignettes/fig/GMD-fig-example-ghist-01.pdf
GMD/vignettes/fig/GMD-fig-case-chipseq-01.pdf
GMD/vignettes/fig/GMD-fig-case-chipseq-02.pdf
GMD/vignettes/fig/GMD-fig-example-heatmap3b-01.pdf
GMD/vignettes/fig/hg19-RPS13-histone.pdf
GMD/vignettes/fig/GMD-fig-example-css-01.pdf
GMD/vignettes/fig/GMD-fig-example-gclust-01.pdf
GMD/vignettes/fig/GMD-fig-example-heatmap3a-01.pdf
GMD/vignettes/fig/GMD-fig-case-iris-01.pdf
GMD/vignettes/fig/GMD-fig-example-gdist-01.pdf
GMD/vignettes/fig/GMD-fig-case-cage-02.pdf
GMD/vignettes/fig/GMD-fig-case-cage-01.pdf
GMD/vignettes/R
GMD/vignettes/R/example-gdist.R
GMD/vignettes/R/example-GMD.R
GMD/vignettes/R/example-ghist.R
GMD/vignettes/R/example-heatmap3b.R
GMD/vignettes/R/hello-GMD.R
GMD/vignettes/R/case-nottem.R
GMD/vignettes/R/example-css.R
GMD/vignettes/R/case-chipseq.R
GMD/vignettes/R/example-heatmap3a.R
GMD/vignettes/R/case-cage.R
GMD/vignettes/R/case-iris.R
GMD/vignettes/GMD-vignette.Rnw
GMD/vignettes/Xvignette.sty
GMD/vignettes/GMD.bib
GMD/MD5
GMD/build
GMD/build/vignette.rds
GMD/DESCRIPTION
GMD/man
GMD/man/GMD-package.Rd GMD/man/gmdp.Rd GMD/man/heatmap.3.Rd GMD/man/legend.Rd GMD/man/css.Rd GMD/man/mhist.summary.Rd GMD/man/bedgraph.to.depth.Rd GMD/man/ts2df.Rd GMD/man/chipseq.Rd GMD/man/elbow.Rd GMD/man/plot.mhist.Rd GMD/man/plot.gmdm.Rd GMD/man/cage.Rd GMD/man/gmdm.Rd GMD/man/gdist.Rd GMD/man/get.sep.Rd GMD/man/plot.gmdp.Rd GMD/man/ghist.Rd GMD/man/equalize.list.Rd
GMD/.Rinstignore

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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