GMD: Generalized Minimum Distance of distributions

GMD is a package for non-parametric distance measurement between two discrete frequency distributions.

AuthorXiaobei Zhao [aut, cre, cph], Albin Sandelin [aut]
Date of publication2016-12-27 15:28:19
MaintainerXiaobei Zhao <xiaobei@binf.ku.dk>
LicenseGPL (>= 2)
Version0.3.3
http://CRAN.R-project.org/package=GMD

View on CRAN

Files in this package

GMD
GMD/inst
GMD/inst/CITATION
GMD/inst/tests
GMD/inst/tests/GMD-demo.R
GMD/inst/extdata
GMD/inst/extdata/hg19
GMD/inst/extdata/hg19/H3K36me3.BedGraph.gz
GMD/inst/extdata/hg19/H3K27me3.BedGraph.gz
GMD/inst/extdata/hg19/H3K9me3.BedGraph.gz
GMD/inst/extdata/hg19/H3K4me2.BedGraph.gz
GMD/inst/extdata/hg19/H3K4me1.BedGraph.gz
GMD/inst/extdata/hg19/H3K4me3.BedGraph.gz
GMD/inst/doc
GMD/inst/doc/GMD-data-processing.Rnw
GMD/inst/doc/GMD-vignette.pdf
GMD/inst/doc/GMD-vignette.Rnw
GMD/inst/doc/GMD-data-processing.pdf
GMD/inst/doc/GMD-vignette.R
GMD/inst/doc/GMD-data-processing.R
GMD/src
GMD/src/base.h
GMD/src/gmd.h
GMD/src/gmd.c
GMD/NAMESPACE
GMD/demo
GMD/demo/00Index
GMD/demo/GMD-demo.R
GMD/NEWS
GMD/data
GMD/data/cage.RData
GMD/data/chipseq_hCD4T.RData
GMD/data/chipseq_mES.RData
GMD/data/cagel.RData
GMD/R
GMD/R/GMD-data.R GMD/R/ghist.R GMD/R/heatmap3.R GMD/R/GMD-package.R GMD/R/css.R GMD/R/GMD-internal.R GMD/R/gmdp.R GMD/R/util.R GMD/R/gdist.R GMD/R/gmdm.R GMD/R/imports.R
GMD/vignettes
GMD/vignettes/GMD-data-processing.Rnw
GMD/vignettes/bioinfo.sty
GMD/vignettes/fig
GMD/vignettes/fig/GMD-fig-case-nottem-01.pdf
GMD/vignettes/fig/GMD-fig-example-ghist-02.pdf
GMD/vignettes/fig/GMD-fig-example-ghist-01b.pdf
GMD/vignettes/fig/GMD-fig-example-GMD-01.pdf
GMD/vignettes/fig/GMD-fig-example-ghist-01.pdf
GMD/vignettes/fig/GMD-fig-case-chipseq-01.pdf
GMD/vignettes/fig/GMD-fig-case-chipseq-02.pdf
GMD/vignettes/fig/GMD-fig-example-heatmap3b-01.pdf
GMD/vignettes/fig/hg19-RPS13-histone.pdf
GMD/vignettes/fig/GMD-fig-example-css-01.pdf
GMD/vignettes/fig/GMD-fig-example-gclust-01.pdf
GMD/vignettes/fig/GMD-fig-example-heatmap3a-01.pdf
GMD/vignettes/fig/GMD-fig-case-iris-01.pdf
GMD/vignettes/fig/GMD-fig-example-gdist-01.pdf
GMD/vignettes/fig/GMD-fig-case-cage-02.pdf
GMD/vignettes/fig/GMD-fig-case-cage-01.pdf
GMD/vignettes/R
GMD/vignettes/R/example-gdist.R
GMD/vignettes/R/example-GMD.R
GMD/vignettes/R/example-ghist.R
GMD/vignettes/R/example-heatmap3b.R
GMD/vignettes/R/hello-GMD.R
GMD/vignettes/R/case-nottem.R
GMD/vignettes/R/example-css.R
GMD/vignettes/R/case-chipseq.R
GMD/vignettes/R/example-heatmap3a.R
GMD/vignettes/R/case-cage.R
GMD/vignettes/R/case-iris.R
GMD/vignettes/GMD-vignette.Rnw
GMD/vignettes/Xvignette.sty
GMD/vignettes/GMD.bib
GMD/MD5
GMD/build
GMD/build/vignette.rds
GMD/DESCRIPTION
GMD/man
GMD/man/GMD-package.Rd GMD/man/gmdp.Rd GMD/man/heatmap.3.Rd GMD/man/legend.Rd GMD/man/css.Rd GMD/man/mhist.summary.Rd GMD/man/bedgraph.to.depth.Rd GMD/man/ts2df.Rd GMD/man/chipseq.Rd GMD/man/elbow.Rd GMD/man/plot.mhist.Rd GMD/man/plot.gmdm.Rd GMD/man/cage.Rd GMD/man/gmdm.Rd GMD/man/gdist.Rd GMD/man/get.sep.Rd GMD/man/plot.gmdp.Rd GMD/man/ghist.Rd GMD/man/equalize.list.Rd
GMD/.Rinstignore

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