Files in GMD

Generalized Minimum Distance of distributions

inst

inst/CITATION

inst/tests

inst/tests/GMD-demo.R

inst/extdata

inst/extdata/hg19

inst/extdata/hg19/H3K36me3.BedGraph.gz

inst/extdata/hg19/H3K27me3.BedGraph.gz

inst/extdata/hg19/H3K9me3.BedGraph.gz

inst/extdata/hg19/H3K4me2.BedGraph.gz

inst/extdata/hg19/H3K4me1.BedGraph.gz

inst/extdata/hg19/H3K4me3.BedGraph.gz

inst/doc

inst/doc/GMD-data-processing.Rnw

inst/doc/GMD-vignette.pdf

inst/doc/GMD-vignette.Rnw

inst/doc/GMD-data-processing.pdf inst/doc/GMD-vignette.R inst/doc/GMD-data-processing.R

src

src/base.h

src/gmd.h

src/gmd.c

NAMESPACE

demo

demo/00Index

demo/GMD-demo.R

NEWS

data

data/cage.RData

data/chipseq_hCD4T.RData

data/chipseq_mES.RData

data/cagel.RData

R

R/GMD-data.R R/ghist.R R/heatmap3.R R/GMD-package.R R/css.R R/GMD-internal.R R/gmdp.R R/util.R R/gdist.R R/gmdm.R R/imports.R

vignettes

vignettes/GMD-data-processing.Rnw

vignettes/bioinfo.sty

vignettes/fig

vignettes/fig/GMD-fig-case-nottem-01.pdf vignettes/fig/GMD-fig-example-ghist-02.pdf vignettes/fig/GMD-fig-example-ghist-01b.pdf vignettes/fig/GMD-fig-example-GMD-01.pdf vignettes/fig/GMD-fig-example-ghist-01.pdf vignettes/fig/GMD-fig-case-chipseq-01.pdf vignettes/fig/GMD-fig-case-chipseq-02.pdf vignettes/fig/GMD-fig-example-heatmap3b-01.pdf vignettes/fig/hg19-RPS13-histone.pdf vignettes/fig/GMD-fig-example-css-01.pdf vignettes/fig/GMD-fig-example-gclust-01.pdf vignettes/fig/GMD-fig-example-heatmap3a-01.pdf vignettes/fig/GMD-fig-case-iris-01.pdf vignettes/fig/GMD-fig-example-gdist-01.pdf vignettes/fig/GMD-fig-case-cage-02.pdf vignettes/fig/GMD-fig-case-cage-01.pdf

vignettes/R

vignettes/R/example-gdist.R vignettes/R/example-GMD.R vignettes/R/example-ghist.R vignettes/R/example-heatmap3b.R vignettes/R/hello-GMD.R vignettes/R/case-nottem.R vignettes/R/example-css.R vignettes/R/case-chipseq.R vignettes/R/example-heatmap3a.R vignettes/R/case-cage.R vignettes/R/case-iris.R

vignettes/GMD-vignette.Rnw

vignettes/Xvignette.sty

vignettes/GMD.bib

MD5

build

build/vignette.rds

DESCRIPTION

man

man/GMD-package.Rd man/gmdp.Rd man/heatmap.3.Rd man/legend.Rd man/css.Rd man/mhist.summary.Rd man/bedgraph.to.depth.Rd man/ts2df.Rd man/chipseq.Rd man/elbow.Rd man/plot.mhist.Rd man/plot.gmdm.Rd man/cage.Rd man/gmdm.Rd man/gdist.Rd man/get.sep.Rd man/plot.gmdp.Rd man/ghist.Rd man/equalize.list.Rd

.Rinstignore

GMD documentation built on May 29, 2017, 10:41 a.m.