Description Usage Details References See Also Examples
The Distributions of Histone Modification Enrichment (and Others) by ChIP-seq reads that are binned, aligned and averaged around +/-5000nt of Transcription Start Sites (TSSs) of scattered-type TSSDs (see References).
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chipseq_mES
is a list of 6 named ChIP-seq read distributions from mouse ES cells.
chipseq_hCD4T
is a list of 40 named ChIP-seq read distributions from human CD4+ T cells.
Zhao et al (2011), "Systematic Clustering of Transcription Start Site Landscapes", PLoS ONE 6(8): e23409.
http://dx.plos.org/10.1371/journal.pone.0023409
gmdp
and gmdm
, with examples using chipseq
. cage
for data of Transcription Start Sites (TSSs) by CAGE tags.
1 2 3 4 5 6 7 8 9 10 | require(GMD)
help(chipseq)
data(chipseq_mES)
class(chipseq_mES)
length(chipseq_mES)
names(chipseq_mES)
## Not run: chipseq_mES
data(chipseq_hCD4T)
names(chipseq_hCD4T)
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