GUniFrac: Generalized UniFrac distances

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Generalized UniFrac distance for comparing microbial communities. Permutational multivariate analysis of variance using multiple distance matrices.

Author
Jun Chen
Date of publication
2012-04-28 18:47:09
Maintainer
ORPHANED
License
GPL-2
Version
1.0

View on CRAN

Man pages

GUniFrac
Generalized UniFrac distances for comparing microbial...
GUniFrac-package
Generalized UniFrac distance for comparing microbial...
PermanovaG
Permutational multivariate analysis of variance using...
Rarefy
Rarefy the OTU table to an equal sequencing depth
throat.meta
Meta data of the throat microbiome samples.
throat.otu.tab
OTU count table from 16S sequencing of the throat microbiome...
throat.tree
UPGMA tree of the OTUs from 16S sequencing of the throat...

Files in this package

GUniFrac
GUniFrac/NAMESPACE
GUniFrac/data
GUniFrac/data/throat.tree.rda
GUniFrac/data/throat.meta.rda
GUniFrac/data/throat.otu.tab.rda
GUniFrac/R
GUniFrac/R/GUniFrac.R
GUniFrac/MD5
GUniFrac/DESCRIPTION
GUniFrac/man
GUniFrac/man/throat.otu.tab.Rd
GUniFrac/man/GUniFrac-package.Rd
GUniFrac/man/throat.tree.Rd
GUniFrac/man/throat.meta.Rd
GUniFrac/man/GUniFrac.Rd
GUniFrac/man/PermanovaG.Rd
GUniFrac/man/Rarefy.Rd