throat.tree: UPGMA Tree of Throat Microbiome OTUs
In GUniFrac: Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis
throat.tree R Documentation
UPGMA Tree of Throat Microbiome OTUs
Description
The OTU tree is constructed using UPGMA on the K80 distance matrice of
the OTUs. It is a rooted tree of class "phylo".
Usage
data(throat.tree)
Details
The OTUs are produced by the QIIME software. Singleton OTUs have
been discarded.
Source
Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, et al. (2010)
Disordered Microbial Communities in the Upper Respiratory Tract of
Cigarette Smokers. PLoS ONE 5(12): e15216.
Examples
data(throat.tree)
GUniFrac documentation built on Sept. 14, 2023, 1:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| throat.tree | R Documentation |
UPGMA Tree of Throat Microbiome OTUs
Description
The OTU tree is constructed using UPGMA on the K80 distance matrice of the OTUs. It is a rooted tree of class "phylo".
Usage
data(throat.tree)Details
The OTUs are produced by the QIIME software. Singleton OTUs have been discarded.
Source
Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, et al. (2010) Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers. PLoS ONE 5(12): e15216.
Examples
data(throat.tree)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.