throat.otu.tab: OTU count table from 16S sequencing of the throat microbiome...

Description Usage Format Details Source Examples

Description

It is part of a microbiome data set for studying the effect of smoking on the upper respiratory tract microbiome. The original data set contains samples from both throat and nose microbiomes, and from both body sides. This data set comes from the throat microbiome of left body side. It contains 60 subjects consisting of 32 nonsmokers and 28 smokers.

Usage

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Format

The format is: chr "throat.otu.tab"

Details

The OTU table is produced by the QIIME software. Singleton OTUs have been discarded.

Source

Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, et al. (2010) Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers. PLoS ONE 5(12): e15216.

Examples

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data(throat.otu.tab)
## maybe str(throat.otu.tab) ; plot(throat.otu.tab) ...

Example output

Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.4-3
Loading required package: ape

GUniFrac documentation built on May 2, 2019, 2:08 a.m.