vaginal.otu.tab: Vaginal Microbiome OTU Count Table

In GUniFrac: Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis

Vaginal Microbiome OTU Count Table

Description

OTU count table from 16S V3-V5 targeted sequencing of the vaginal microbiome samples from the HMP project. A total of 780 OTUs from 381 samples.

Usage

data(vaginal.otu.tab)

Details

The OTU table was taken from R bioconductor "HMP16SData" package. OTUs with prevalence less than 10% and maximum proportion less than 0.2% were removed. This OTU table can be used for simulating vaginal microbiome sequencing data.

Source

Schiffer L, Azhar R, Shepherd L, Ramos M, Geistlinger L, Huttenhower C, Dowd JB, Segata N, Waldron L (2019). “HMP16SData: Efficient Access to the Human Microbiome Project through Bioconductor.” American Journal of Epidemiology. doi: 10.1093/aje/kwz006.

Examples

data(stool.otu.tab)

GUniFrac documentation built on Sept. 14, 2023, 1:07 a.m.